Food Microbiology, Gut Health, and Fermentation

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  1. 2024
  2. Published

    16S rRNA gene sequencing of non-lactic acid bacteria cultures from lait caillé in Burkina Faso

    Bayili, G. R., Compaoré, C. S., Diawara, B., Jespersen, Lene & Sawadogo-Lingani, H., 2024, In: All Life. 17, 1, 8 p., 2309346.

    Research output: Contribution to journal › Journal article › Research › peer-review

  3. Published

    Escherichia coli CRISPR arrays from early life fecal samples preferentially target prophages

    Dion, M. B., Shah, S. A., Deng, Ling, Thorsen, Jonathan Jan Ilve, Stokholm, Jakob, Krogfelt, K. A., Schjørring, S., Horvath, P., Allard, A., Nielsen, Dennis Sandris, Petit, M. A. & Moineau, S., 2024, In: The ISME Journal. 18, 1, 9 p., wrae005.

    Research output: Contribution to journal › Journal article › Research › peer-review

  4. Published

    A Gently Processed Skim Milk-Derived Whey Protein Concentrate for Infant Formula: Effects on Gut Development and Immunity in Preterm Pigs

    Aasmul-Olsen, Karoline, Akıllıoğlu, H. G., Christiansen, Line Iadsatian, Engholm-Keller, Kasper, Brunse, Anders, Stefanova, Denitsa Vladimirova, Bjørnshave, A., Bechshøft, M. R., Skovgaard, K., Thymann, Thomas, Sangild, Per Torp, Lund, Marianne N. & Bering, S. B., 2024, In: Molecular Nutrition and Food Research. 68, 6, 2300458.

    Research output: Contribution to journal › Journal article › Research › peer-review

  5. Published

    A Stress Reduction Intervention for Lactating Mothers Alters Maternal Gut, Breast Milk, and Infant Gut Microbiomes: Data from a Randomized Controlled Trial

    Yu, J., Zhang, Y., Wells, J. C. K., Wei, Z., Bajaj-Elliott, M., Nielsen, Dennis Sandris & Fewtrell, M. S., 2024, In: Nutrients. 16, 7, 15 p., 1074.

    Research output: Contribution to journal › Journal article › Research › peer-review

  6. Published

    Analyzing postprandial metabolomics data using multiway models: a simulation study

    Li, L., Yan, S., Bakker, B. M., Hoefsloot, H., Chawes, Bo Lund Krogsgaard, Horner, David Lyle George, Rasmussen, Morten Arendt, Smilde, Age Klaas & Acar, E., 2024, In: BMC Bioinformatics. 25, 22 p., 94.

    Research output: Contribution to journal › Journal article › Research › peer-review

  7. Published

    Bacterial colonisation of the airway in neonates and risk of asthma and allergy until age 18 years

    Sunde, R. B., Thorsen, J., Kim, M., Schoos, Ann-Marie Malby, Stokholm, Jakob, Bønnelykke, Klaus, Bisgaard, H. & Chawes, Bo Lund Krogsgaard, 2024, In: The European respiratory journal. 63, 1, 15 p., 2300471.

    Research output: Contribution to journal › Journal article › Research › peer-review

  8. Published

    Characterization and diversity of spoilage yeasts in dairy production with focus on their inhibitory potential

    Geronikou, Athina, 2024, Department of Food Science, Faculty of Science, University of Copenhagen. 166 p.

    Research output: Book/Report › Ph.D. thesis › Research

  9. Published

    Danish consumers’ knowledge about and willingness to buy dairy products close to the best-before-date

    Melgaard, C. V., Voss, E., Hansen, M. F., Lassen, M., Hvidtfeldt, M., Pandey, Sujita, Rasmussen, Morten Arendt & Thomsen, Marianne, 2024, In: Food Frontiers. 5, 2, p. 494-507

    Research output: Contribution to journal › Journal article › Research › peer-review

  10. Published

    Dimensional profiling of psychopathology in children and adolescents based on the K-SADS-PL and an analysis of the construct validity of two ADHD symptom dimensions

    Hagstrøm, Julie, Nielsen, Tine, Sørensen, M. E., Aagaard, K., Rasmussen, Morten Arendt, Rosenberg, J. B., Mohammadzadeh, P., Sevelsted, A., Hernández-lorca, M., Fagerlund, Birgitte, Rydkjær, J., Pagsberg, Anne Katrine, Kaufman, J., Ebdrup, Bjørn, Bilenberg, N. & Jepsen, J. R. M., 2024, In: Nordic Journal of Psychiatry. 78, 1, p. 71-78 9 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  11. Published

    Effects of Wholegrain Compared to Refined Grain Intake on Cardiometabolic Risk Markers, Gut Microbiota, and Gastrointestinal Symptoms in Children: A Randomized Crossover Trial

    Madsen, M. T. B., Landberg, R., Nielsen, Dennis Sandris, Zhang, Yichang, Anneberg, O. M. R., Lauritzen, Lotte & Damsgaard, Camilla Trab, 2024, In: American Journal of Clinical Nutrition. 119, 1, p. 18-28

    Research output: Contribution to journal › Journal article › Research › peer-review

  12. Published

    Enhancement of pyranoanthocyanin formation in blueberry wine with non-Saccharomyces yeasts

    Zhou, J., Tang, C., Zou, S., Lei, L., Wu, Y., Yang, W., Harindintwali, J. D., Zhang, J., Zeng, W., Deng, D., Zhao, M., Yu, X., Liu, X., Qiu, S. & Arneborg, Nils, 2024, In: Food Chemistry. 438, 10 p., 137956.

    Research output: Contribution to journal › Journal article › Research › peer-review

  13. Published

    Fish oil supplementation during pregnancy, anthropometrics, and metabolic health at age ten: A randomized clinical trial

    Vinding, R. K., Sevelsted, A., Horner, D., Vahman, N., Lauritzen, Lotte, Hagen, C. P., Chawes, Bo Lund Krogsgaard, Stokholm, Jakob & Bønnelykke, Klaus, 2024, In: American Journal of Clinical Nutrition. 119, 4, p. 960-968

    Research output: Contribution to journal › Journal article › Research › peer-review

  14. Published

    Flagellar interference with plasmid uptake in biofilms: a joint experimental and modeling study

    Røder, Henriette Lyng, Christidi, E., Amador Hierro, Cristina Isabel, Music, S., Olesen, Asmus Kalckar, Svensson, B., Madsen, Jonas Stenløkke, Herschend, J., Kreft, J. & Burmølle, Mette, 2024, In: Applied and Environmental Microbiology. 90, 1, 15 p., e01510-23.

    Research output: Contribution to journal › Journal article › Research › peer-review

  15. Published

    High fat diet is associated with gut microbiota dysbiosis and decreased gut microbial derived metabolites related to metabolic health in young Göttingen Minipigs

    Lützhøft, Ditte Olsen, Bækgård, Cecilie, Wimborne, E., Straarup, E. M., Pedersen, K. M., Swann, J. R., Pedersen, H. D., Kristensen, K., Morgills, L., Nielsen, Dennis Sandris, Hansen, Axel Kornerup, Bracken, M. K., Cirera, Susanna & Christoffersen, B. Ø., 2024, In: PLoS ONE. 19, 3, 27 p., e0298602.

    Research output: Contribution to journal › Journal article › Research › peer-review

  16. Published

    High-dose vitamin D3 supplementation in pregnancy and risk of neurodevelopmental disorders in the children at age 10: A randomized clinical trial

    Aagaard, K., Jepsen, J. R. M., Sevelsted, A., Horner, D., Vinding, R., Rosenberg, J. B., Brustad, N., Eliasen, A., Mohammadzadeh, P., Følsgaard, N., Hernández-lorca, M., Fagerlund, Birgitte, Glenthøj, Birte Yding, Rasmussen, Morten Arendt, Bilenberg, N., Stokholm, Jakob, Bønnelykke, Klaus, Ebdrup, Bjørn & Chawes, Bo Lund Krogsgaard, 2024, In: The American Journal of Clinical Nutrition. 119, 2, p. 362-370 9 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  17. Published

    Interspecific interactions facilitate keystone species in a multispecies biofilm that promotes plant growth

    Yang, Nan, Røder, Henriette Lyng, Wicaksono, W. A., Wassermann, B., Russel, J., Li, Xuan Ji, Nesme, Joseph, Berg, G., Sørensen, Søren Johannes & Burmølle, Mette, 2024, In: The ISME Journal. 18, 1, 15 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  18. Published

    Key risk factors of asthma-like symptoms are mediated through infection burden in early childhood

    Kyvsgaard, J. N., Brustad, N., Hesselberg, L. M., Vahman, N., Thorsen, J., Schoos, A. M. M., Bønnelykke, K., Stokholm, Jakob & Chawes, B. L., 2024, In: Journal of Allergy and Clinical Immunology. 153, 3, p. 684-694 11 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  19. Published

    Maternal Diet Associates with Offspring Bone Mineralization, Fracture Risk and Enamel Defects in Childhood and Influences the Prenatal Effect of High-Dose Vitamin D Supplementation

    Kim, M., Nørrisgaard, P. E., Vahman, N., Cexus, O. N. F., Townsend, P. A., Stokholm, Jakob, Bønnelykke, Klaus, Chawes, Bo Lund Krogsgaard & Brustad, N., 2024, In: Nutrients. 16, 3, 16 p., 405.

    Research output: Contribution to journal › Journal article › Research › peer-review

  20. Published

    Metabolic maturation in the infant urine during the first 3 months of life

    Astono, J., Poulsen, K. O., Larsen, R. A., Jessen, E. V., Sand, C. B., Rasmussen, Morten Arendt & Sundekilde, U. K., 2024, In: Scientific Reports. 14, 11 p., 5697.

    Research output: Contribution to journal › Journal article › Research › peer-review

  21. Published

    Purification and Up-Concentration of Bacteriophages and Viruses from Fecal Samples

    Larsen, Frej Andreas Nøhr, Jakobsen, Rasmus Riemer, Mao, Xiaotian, Castro-Mejia, J., Deng, Ling & Nielsen, Dennis Sandris, 2024, Bacteriophages: Methods and Protocols. Humana Press, p. 105-110 6 p. (Methods in Molecular Biology, Vol. 2738).

    Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review

  22. Published

    Randomised, Placebo-Controlled Investigation of the Impact of Probiotic Consumption on Gut Microbiota Diversity and the Faecal Metabolome in Seniors

    van Zanten, G. C., Madsen, Anne Lundager, Yde, C. C., Krych, Lukasz, Yeung, N., Saarinen, M. T., Kot, Witold, Jensen, H. M., Rasmussen, Morten Arendt, Ouwehand, A. C. & Nielsen, Dennis Sandris, 2024, In: Microorganisms. 12, 4, 18 p., 796.

    Research output: Contribution to journal › Journal article › Research › peer-review

  23. Published

    Revised whole genome and DNA methylome of Mycobacterium marinum type strain ATCC 927T

    Savijoki, K., Deptula, Paulina, Roberts, R. J., Hammarén, M., Yli-Kauhaluoma, J., Varmanen, P. & Parikka, M., 2024, In: Microbiology resource announcements. 13, 4, 5 p., e0101623.

    Research output: Contribution to journal › Journal article › Research › peer-review

  24. E-pub ahead of print

    Supplementation of lactobacillus-fermented rapeseed meal in broiler diet reduces Campylobacter jejuni cecal colonization and limits the l-tryptophan and l-histidine biosynthesis pathways

    Khattak, F., Galgano, S., Pedersen, N. R., Hui, Y., Matthiesen, R. & Houdijk, J., 2024, (E-pub ahead of print) In: Journal of the Science of Food and Agriculture.

    Research output: Contribution to journal › Journal article › Research › peer-review

  25. Published

    Synergistic activity of Limosilactobacillus reuteri KUB-AC5 and water-based plants against Salmonella challenge in a human in vitro gut model

    Mok, K., Honwichit, O., Funnuam, T., Charoensiddhi, S., Nitisinprasert, S., Nielsen, Dennis Sandris & Nakphaichit, M., 2024, In: Scientific Reports. 14, 12 p., 4730.

    Research output: Contribution to journal › Journal article › Research › peer-review

  26. Published

    The dynamics of phage predation on a microcolony

    Eriksen, R. S., Larsen, Frej Andreas Nøhr, Svenningsen, Sine Lo, Sneppen, Kim & Mitarai, Namiko, 2024, In: Biophysical Journal. 123, 2, p. 147-156 10 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  27. Published

    The effect of in vitro simulated colonic pH gradients on microbial activity and metabolite production using common prebiotics as substrates

    Xie, Zhuqing, He, W., Gobbi, Alex, Bertram, H. C. & Nielsen, Dennis Sandris, 2024, In: BMC Microbiology. 24, 13 p., 83.

    Research output: Contribution to journal › Journal article › Research › peer-review

  28. Published

    The impact of lager brewing yeasts on flavor stability of pilot-scale beer during storage

    Murmann, A. N., Bevilacqua, Marta, Danielsen, Bente Pia, Jansson, T., Engholm-Keller, Kasper, Poojary, Mahesha Manjunatha, Arneborg, Nils & Lund, Marianne N., 2024, In: European Food Research and Technology. 250, p. 715-725

    Research output: Contribution to journal › Journal article › Research › peer-review

  29. Published

    Tracking alternative versions of the galactose gene network in the genus Saccharomyces and their expansion after domestication

    Pontes, A., Paraíso, F., Liu, Y., Limtong, S., Jindamorakot, S., Jespersen, Lene, Gonçalves, C., Rosa, C. A., Tsai, I. J., Rokas, A., Hittinger, C. T., Gonçalves, P. & Sampaio, J. P., 2024, In: iScience. 27, 2, 17 p., 108987.

    Research output: Contribution to journal › Journal article › Research › peer-review

  30. Published

    Understanding bacterial surface and adhesion properties and the implications for Pickering stabilization of colloidal structures

    Jiang, X., Whitehead, K. A., Arneborg, Nils, Fang, Y. & Risbo, Jens, 2024, In: Current Opinion in Colloid & Interface Science. 69, 15 p., 101767.

    Research output: Contribution to journal › Review › Research › peer-review

  31. Published

    Vertical Metabolome Transfer from Mother to Child: An Explainable Machine Learning Method for Detecting Metabolomic Heritability

    Lovrić, M., Horner, D., Chen, L., Brustad, N., Schoos, Ann-Marie Malby, Lasky-Su, J., Chawes, Bo Lund Krogsgaard & Rasmussen, Morten Arendt, 2024, In: Metabolites. 14, 3, 15 p., 136.

    Research output: Contribution to journal › Journal article › Research › peer-review

  32. Published

    Wine Yeast as Potential Biological Control Agent Against Downy Mildew of Grapevine (Plasmopara viticola)

    Behrendt, R. A., Toldam-Andersen, Torben, Arneborg, Nils, Collinge, David B. & Jensen, Birgit, 2024, Proceedings of the 21st International Conference on Organic Fruit- Growing. p. 51-57 7 p.

    Research output: Chapter in Book/Report/Conference proceeding › Article in proceedings › Research › peer-review

  33. 2023
  34. Published

    25-hydroxyvitamin D and risk of atopic diseases and infections in early childhood

    Brustad, N., Kim, M., Skov, F., Schoos, Ann-Marie Malby, Stokholm, Jakob, Bønnelykke, Klaus & Chawes, Bo Lund Krogsgaard, 2023, In: Allergy: European Journal of Allergy and Clinical Immunology. 78, 10, p. 2770-2773

    Research output: Contribution to journal › Comment/debate › Research › peer-review

  35. Published

    Yarrowia lipolytica - a Potential Candidate for the production of Sour Beer and other Beverages

    Sørensen, Anders Bagger, 2023, Department of Food Science, Faculty of Science, University of Copenhagen. 112 p.

    Research output: Book/Report › Ph.D. thesis › Research

  36. Published

    Age-related effects on the modulation of gut microbiota by pectins and their derivatives: an in vitro study

    Gu, Fangjie, Larsen, Nadja, Pascale, N., Petersen, S. A., Khakimov, Bekzod, Respondek, F. & Jespersen, Lene, 2023, In: Frontiers in Microbiology. 14, 14 p., 1207837.

    Research output: Contribution to journal › Journal article › Research › peer-review

  37. Published

    Alterations of NMR-Based Lipoprotein Profile Distinguish Unstable Angina Patients with Different Severity of Coronary Lesions

    Ye, Y., Fan, J., Chen, Z., Li, X., Wu, M., Liu, W., Zhou, S., Rasmussen, Morten Arendt, Engelsen, Søren Balling, Chen, Y., Khakimov, Bekzod & Xia, M., 2023, In: Metabolites. 13, 2, 19 p., 273.

    Research output: Contribution to journal › Journal article › Research › peer-review

  38. Published

    Antifouling potential of enzymes applied to reverse osmosis membranes

    Khani, M., Hansen, Mads Frederik, Knoechel, Susanne, Rasekh, B., Ghasemipanah, K., Zamir, S. M., Nosrati, M. & Burmølle, Mette, 2023, In: Biofilm. 5, 9 p., 100119.

    Research output: Contribution to journal › Journal article › Research › peer-review

  39. Published

    Atopic and non-atopic effects of fish oil supplementation during pregnancy

    Bisgaard, H., Mikkelsen, M., Rasmussen, Morten Arendt, Sevelsted, A., Schoos, Ann-Marie Malby, Brustad, N., Eliasen, A. U., Thorsen, J., Chawes, Bo Lund Krogsgaard, Gürdeniz, G., Morin, A., Stark, K., Stokholm, Jakob, Ober, C., Pedersen, C. E. T. & Bønnelykke, Klaus, 2023, In: Thorax. 78, 12, p. 1168–1174 7 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  40. Published

    Bacterial community development and diversity during the first year of production in a new salmon processing plant

    Thomassen, G. M. B., Krych, Lukasz, Knoechel, Susanne & Mehli, L., 2023, In: Food Microbiology. 109, 10 p., 104138.

    Research output: Contribution to journal › Journal article › Research › peer-review

  41. Published

    Bioprotection Potential of Lacticaseibacillus rhamnosus LRH01 and Lactiplantibacillus plantarum LP01 against Spoilage-Associated Penicillium Strains in Yoghurt

    Shi, C. & Knoechel, Susanne, 2023, In: Molecules. 28, 21, 16 p., 7397.

    Research output: Contribution to journal › Journal article › Research › peer-review

  42. Published

    COVID-19 lockdown, genetic ADHD susceptibility, and mental health in 10- year-old children

    Hernández-lorca, M., Sevelsted, A., Jepsen, J. R. M., Pedersen, C. T., Rosenberg, J. B., Mohammadzadeh, P., Rasmussen, Morten Arendt, Sørensen, M. E., Bilenberg, N., Glenthøj, Birte Yding, Fagerlund, Birgitte, Chawes, Bo Lund Krogsgaard, Stokholm, Jakob, Vinding, R. K., Ebdrup, Bjørn & Bønnelykke, Klaus, 2023, In: Psychiatry Research. 329, 9 p., 115481.

    Research output: Contribution to journal › Journal article › Research › peer-review

  43. Published

    CRISPR-Cas provides limited phage immunity to a prevalent gut bacterium in gnotobiotic mice

    Rasmussen, Torben Sølbeck, Koefoed, A. K., Deng, Ling, Muhammed, Musemma Kedir, Rousseau, G. M., Kot, Witold, Sprotte, S., Neve, H., Franz, C. M. A. P., Hansen, Axel Kornerup, Vogensen, Finn Kvist, Moineau, S. & Nielsen, Dennis Sandris, 2023, In: ISME Journal. 17, p. 432–442

    Research output: Contribution to journal › Journal article › Research › peer-review

  44. Published

    Can breastfeeding promote an antibiotic-resilient microbiome?

    Stokholm, Jakob & Thorsen, Jonathan Jan Ilve, 2023, In: Med. 4, 2, p. 67-68 2 p.

    Research output: Contribution to journal › Comment/debate › Research

  45. Published

    Cesarean section induced dysbiosis promotes type 2 immunity but not oxazolone-induced dermatitis in mice

    Zachariassen, L. F., Ebert, M. B. B., Mentzel, Caroline M. Junker, Deng, Ling, Krych, Lukasz, Nielsen, Dennis Sandris, Stokholm, Jakob & Hansen, Camilla Hartmann Friis, 2023, In: Gut Microbes. 15, 2, 15 p., 2271151.

    Research output: Contribution to journal › Journal article › Research › peer-review

  46. Published

    Changes in Muscle Mass and Strength During Follow-Up After One-Year Resistance Training Interventions in Older Adults

    Mertz, K. H., Reitelseder, S., Rasmussen, Morten Arendt, Bülow, J., Højfeldt, Grith Stougaard, Jensen, M., Hjulmand, M., Lindberg, J., Kramer, M. U., Bechshøft, R. & Holm, L., 2023, In: Journal of Strength and Conditioning Research. 37, 10, p. 2064-2070 7 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  47. Published

    Choice of Ultrafilter Affects Recovery Rate of Bacteriophages

    Larsen, Frej Andreas Nøhr, Offersen, Simone Margaard, Li, V. R., Deng, Ling, Nielsen, Dennis Sandris & Rasmussen, Torben Sølbeck, 2023, In: Viruses. 15, 10, 12 p., 2051.

    Research output: Contribution to journal › Journal article › Research › peer-review

  48. Published

    Comparative gene analysis of beer tolerant and sensitive Lactobacillus brevis

    Zhao, Y., Wu, X. & Siegumfeldt, Henrik, 2023, In: Food Science and Technology (Brazil). 43, 9 p., e126422.

    Research output: Contribution to journal › Journal article › Research › peer-review

  49. Published

    Complete Genome Sequences of Three Lactiplantibacillus plantarum Strains Isolated from Traditional Iranian Raw Milk Motal Cheese

    Fatemizadeh, S. S., Krych, Lukasz, Castro-Mejía, J. L., Stefanova, Denitsa Vladimirova, Kot, Witold, Najafi, M. B. H. & Nielsen, Dennis Sandris, 2023, In: Microbiology Resource Announcements. 12, 1, 3 p., e0047922.

    Research output: Contribution to journal › Journal article › Research › peer-review

  50. Published

    Complete and Draft Genome Sequences of 52 Bacillus and Priestia Strains Isolated from West African Fermentations and 26 Reference Strains from a Public Culture Collection

    Wiedenbein, Emma Schack, Canoy, Tessa Suzanne, Hui, Y., Parkouda, C., Compaoré, C. S., Ametefe, E., Jakobsen, M., Jespersen, Lene, Nielsen, Dennis Sandris & Roux, S. (ed.), 2023, In: Microbiology resource announcements. 12, 7, 5 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  51. Published

    Diet-associated vertically transferred metabolites and risk of asthma, allergy, eczema, and infections in early childhood

    Brustad, N., Olarini, A., Kim, M., Chen, L., Ali, M., Wang, T., Cohen, A. S., Ernst, M., Hougaard, D., Schoos, Ann-Marie Malby, Stokholm, Jakob, Bønnelykke, Klaus, Lasky-Su, J., Rasmussen, Morten Arendt & Chawes, Bo Lund Krogsgaard, 2023, In: Pediatric Allergy and Immunology. 34, 2, 8 p., e13917.

    Research output: Contribution to journal › Journal article › Research › peer-review

  52. Published

    Dietary non-starch polysaccharides impair immunity to enteric nematode infection

    Valente, Angela Hørdum, Jensen, K. M. R., Myhill, Laura Jessica, Zhu, L., Mentzel, Caroline M. Junker, Krych, Lukasz, Simonsen, H. T., Castro-Mejía, J. L., Gobbi, Alex, Bach Knudsen, K. E., Nielsen, Dennis Sandris, Thamsborg, Stig Milan & Williams, Andrew Richard, 2023, In: BMC Biology. 21, 16 p., 138.

    Research output: Contribution to journal › Journal article › Research › peer-review

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