Food Microbiology, Gut Health, and Fermentation

  1. 2024
  2. Published

    High-dose vitamin D3 supplementation in pregnancy and risk of neurodevelopmental disorders in the children at age 10: A randomized clinical trial

    Aagaard, K., Jepsen, J. R. M., Sevelsted, A., Horner, D., Vinding, R., Rosenberg, J. B., Brustad, N., Eliasen, A., Mohammadzadeh, P., Følsgaard, N., Hernández-lorca, M., Fagerlund, Birgitte, Glenthøj, Birte Yding, Rasmussen, Morten Arendt, Bilenberg, N., Stokholm, Jakob, Bønnelykke, Klaus, Ebdrup, Bjørn & Chawes, Bo Lund Krogsgaard, 2024, In: The American Journal of Clinical Nutrition. 119, 2, p. 362-370 9 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  3. Published

    A Gently Processed Skim Milk-Derived Whey Protein Concentrate for Infant Formula: Effects on Gut Development and Immunity in Preterm Pigs

    Aasmul-Olsen, Karoline, Akıllıoğlu, H. G., Christiansen, Line Iadsatian, Engholm-Keller, Kasper, Brunse, Anders, Stefanova, Denitsa Vladimirova, Bjørnshave, A., Bechshøft, M. R., Skovgaard, K., Thymann, Thomas, Sangild, Per Torp, Lund, Marianne N. & Bering, S. B., 2024, In: Molecular Nutrition and Food Research. 68, 6, 2300458.

    Research output: Contribution to journalJournal articleResearchpeer-review

  4. Published

    Metabolic maturation in the infant urine during the first 3 months of life

    Astono, J., Poulsen, K. O., Larsen, R. A., Jessen, E. V., Sand, C. B., Rasmussen, Morten Arendt & Sundekilde, U. K., 2024, In: Scientific Reports. 14, 11 p., 5697.

    Research output: Contribution to journalJournal articleResearchpeer-review

  5. Published

    16S rRNA gene sequencing of non-lactic acid bacteria cultures from lait caillé in Burkina Faso

    Bayili, G. R., Compaoré, C. S., Diawara, B., Jespersen, Lene & Sawadogo-Lingani, H., 2024, In: All Life. 17, 1, 8 p., 2309346.

    Research output: Contribution to journalJournal articleResearchpeer-review

  6. Published

    Wine Yeast as Potential Biological Control Agent Against Downy Mildew of Grapevine (Plasmopara viticola)

    Behrendt, R. A., Toldam-Andersen, Torben, Arneborg, Nils, Collinge, David B. & Jensen, Birgit, 2024, Proceedings of the 21st International Conference on Organic Fruit- Growing. p. 51-57 7 p.

    Research output: Chapter in Book/Report/Conference proceedingArticle in proceedingsResearchpeer-review

  7. Published

    Escherichia coli CRISPR arrays from early life fecal samples preferentially target prophages

    Dion, M. B., Shah, S. A., Deng, Ling, Thorsen, Jonathan Jan Ilve, Stokholm, Jakob, Krogfelt, K. A., Schjørring, S., Horvath, P., Allard, A., Nielsen, Dennis Sandris, Petit, M. A. & Moineau, S., 2024, In: The ISME Journal. 18, 1, 9 p., wrae005.

    Research output: Contribution to journalJournal articleResearchpeer-review

  8. Published

    The dynamics of phage predation on a microcolony

    Eriksen, R. S., Larsen, Frej Andreas Nøhr, Svenningsen, Sine Lo, Sneppen, Kim & Mitarai, Namiko, 2024, In: Biophysical Journal. 123, 2, p. 147-156 10 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  9. Published

    Characterization and diversity of spoilage yeasts in dairy production with focus on their inhibitory potential

    Geronikou, Athina, 2024, Department of Food Science, Faculty of Science, University of Copenhagen. 166 p.

    Research output: Book/ReportPh.D. thesisResearch

  10. Published

    Dimensional profiling of psychopathology in children and adolescents based on the K-SADS-PL and an analysis of the construct validity of two ADHD symptom dimensions

    Hagstrøm, Julie, Nielsen, Tine, Sørensen, M. E., Aagaard, K., Rasmussen, Morten Arendt, Rosenberg, J. B., Mohammadzadeh, P., Sevelsted, A., Hernández-lorca, M., Fagerlund, Birgitte, Rydkjær, J., Pagsberg, Anne Katrine, Kaufman, J., Ebdrup, Bjørn, Bilenberg, N. & Jepsen, J. R. M., 2024, In: Nordic Journal of Psychiatry. 78, 1, p. 71-78 9 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  11. Published

    Understanding bacterial surface and adhesion properties and the implications for Pickering stabilization of colloidal structures

    Jiang, X., Whitehead, K. A., Arneborg, Nils, Fang, Y. & Risbo, Jens, 2024, In: Current Opinion in Colloid & Interface Science. 69, 15 p., 101767.

    Research output: Contribution to journalReviewResearchpeer-review

  12. E-pub ahead of print

    Supplementation of lactobacillus-fermented rapeseed meal in broiler diet reduces Campylobacter jejuni cecal colonization and limits the l-tryptophan and l-histidine biosynthesis pathways

    Khattak, F., Galgano, S., Pedersen, N. R., Hui, Y., Matthiesen, R. & Houdijk, J., 2024, (E-pub ahead of print) In: Journal of the Science of Food and Agriculture.

    Research output: Contribution to journalJournal articleResearchpeer-review

  13. Published

    Maternal Diet Associates with Offspring Bone Mineralization, Fracture Risk and Enamel Defects in Childhood and Influences the Prenatal Effect of High-Dose Vitamin D Supplementation

    Kim, M., Nørrisgaard, P. E., Vahman, N., Cexus, O. N. F., Townsend, P. A., Stokholm, Jakob, Bønnelykke, Klaus, Chawes, Bo Lund Krogsgaard & Brustad, N., 2024, In: Nutrients. 16, 3, 16 p., 405.

    Research output: Contribution to journalJournal articleResearchpeer-review

  14. Published

    Key risk factors of asthma-like symptoms are mediated through infection burden in early childhood

    Kyvsgaard, J. N., Brustad, N., Hesselberg, L. M., Vahman, N., Thorsen, J., Schoos, A. M. M., Bønnelykke, K., Stokholm, Jakob & Chawes, B. L., 2024, In: Journal of Allergy and Clinical Immunology. 153, 3, p. 684-694 11 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  15. Published

    Purification and Up-Concentration of Bacteriophages and Viruses from Fecal Samples

    Larsen, Frej Andreas Nøhr, Jakobsen, Rasmus Riemer, Mao, Xiaotian, Castro-Mejia, J., Deng, Ling & Nielsen, Dennis Sandris, 2024, Bacteriophages: Methods and Protocols. Humana Press, p. 105-110 6 p. (Methods in Molecular Biology, Vol. 2738).

    Research output: Chapter in Book/Report/Conference proceedingBook chapterResearchpeer-review

  16. Published

    Analyzing postprandial metabolomics data using multiway models: a simulation study

    Li, L., Yan, S., Bakker, B. M., Hoefsloot, H., Chawes, Bo Lund Krogsgaard, Horner, David Lyle George, Rasmussen, Morten Arendt, Smilde, Age Klaas & Acar, E., 2024, In: BMC Bioinformatics. 25, 22 p., 94.

    Research output: Contribution to journalJournal articleResearchpeer-review

  17. Published

    Vertical Metabolome Transfer from Mother to Child: An Explainable Machine Learning Method for Detecting Metabolomic Heritability

    Lovrić, M., Horner, D., Chen, L., Brustad, N., Schoos, Ann-Marie Malby, Lasky-Su, J., Chawes, Bo Lund Krogsgaard & Rasmussen, Morten Arendt, 2024, In: Metabolites. 14, 3, 15 p., 136.

    Research output: Contribution to journalJournal articleResearchpeer-review

  18. Published

    High fat diet is associated with gut microbiota dysbiosis and decreased gut microbial derived metabolites related to metabolic health in young Göttingen Minipigs

    Lützhøft, Ditte Olsen, Bækgård, Cecilie, Wimborne, E., Straarup, E. M., Pedersen, K. M., Swann, J. R., Pedersen, H. D., Kristensen, K., Morgills, L., Nielsen, Dennis Sandris, Hansen, Axel Kornerup, Bracken, M. K., Cirera, Susanna & Christoffersen, B. Ø., 2024, In: PLoS ONE. 19, 3, 27 p., e0298602.

    Research output: Contribution to journalJournal articleResearchpeer-review

  19. Published

    Effects of Wholegrain Compared to Refined Grain Intake on Cardiometabolic Risk Markers, Gut Microbiota, and Gastrointestinal Symptoms in Children: A Randomized Crossover Trial

    Madsen, M. T. B., Landberg, R., Nielsen, Dennis Sandris, Zhang, Yichang, Anneberg, O. M. R., Lauritzen, Lotte & Damsgaard, Camilla Trab, 2024, In: American Journal of Clinical Nutrition. 119, 1, p. 18-28

    Research output: Contribution to journalJournal articleResearchpeer-review

  20. Published

    Danish consumers’ knowledge about and willingness to buy dairy products close to the best-before-date

    Melgaard, C. V., Voss, E., Hansen, M. F., Lassen, M., Hvidtfeldt, M., Pandey, Sujita, Rasmussen, Morten Arendt & Thomsen, Marianne, 2024, In: Food Frontiers. 5, 2, p. 494-507

    Research output: Contribution to journalJournal articleResearchpeer-review

  21. Published

    Synergistic activity of Limosilactobacillus reuteri KUB-AC5 and water-based plants against Salmonella challenge in a human in vitro gut model

    Mok, K., Honwichit, O., Funnuam, T., Charoensiddhi, S., Nitisinprasert, S., Nielsen, Dennis Sandris & Nakphaichit, M., 2024, In: Scientific Reports. 14, 12 p., 4730.

    Research output: Contribution to journalJournal articleResearchpeer-review

  22. Published

    The impact of lager brewing yeasts on flavor stability of pilot-scale beer during storage

    Murmann, A. N., Bevilacqua, Marta, Danielsen, Bente Pia, Jansson, T., Engholm-Keller, Kasper, Poojary, Mahesha Manjunatha, Arneborg, Nils & Lund, Marianne N., 2024, In: European Food Research and Technology. 250, p. 715-725

    Research output: Contribution to journalJournal articleResearchpeer-review

  23. Published

    Tracking alternative versions of the galactose gene network in the genus Saccharomyces and their expansion after domestication

    Pontes, A., Paraíso, F., Liu, Y., Limtong, S., Jindamorakot, S., Jespersen, Lene, Gonçalves, C., Rosa, C. A., Tsai, I. J., Rokas, A., Hittinger, C. T., Gonçalves, P. & Sampaio, J. P., 2024, In: iScience. 27, 2, 17 p., 108987.

    Research output: Contribution to journalJournal articleResearchpeer-review

  24. Published

    Flagellar interference with plasmid uptake in biofilms: a joint experimental and modeling study

    Røder, Henriette Lyng, Christidi, E., Amador Hierro, Cristina Isabel, Music, S., Olesen, Asmus Kalckar, Svensson, B., Madsen, Jonas Stenløkke, Herschend, J., Kreft, J. & Burmølle, Mette, 2024, In: Applied and Environmental Microbiology. 90, 1, 15 p., e01510-23.

    Research output: Contribution to journalJournal articleResearchpeer-review

  25. Published

    Revised whole genome and DNA methylome of Mycobacterium marinum type strain ATCC 927T

    Savijoki, K., Deptula, Paulina, Roberts, R. J., Hammarén, M., Yli-Kauhaluoma, J., Varmanen, P. & Parikka, M., 2024, In: Microbiology resource announcements. 13, 4, 5 p., e0101623.

    Research output: Contribution to journalJournal articleResearchpeer-review

  26. Published

    Bacterial colonisation of the airway in neonates and risk of asthma and allergy until age 18 years

    Sunde, R. B., Thorsen, J., Kim, M., Schoos, Ann-Marie Malby, Stokholm, Jakob, Bønnelykke, Klaus, Bisgaard, H. & Chawes, Bo Lund Krogsgaard, 2024, In: The European respiratory journal. 63, 1, 15 p., 2300471.

    Research output: Contribution to journalJournal articleResearchpeer-review

  27. Published

    Fish oil supplementation during pregnancy, anthropometrics, and metabolic health at age ten: A randomized clinical trial

    Vinding, R. K., Sevelsted, A., Horner, D., Vahman, N., Lauritzen, Lotte, Hagen, C. P., Chawes, Bo Lund Krogsgaard, Stokholm, Jakob & Bønnelykke, Klaus, 2024, In: American Journal of Clinical Nutrition. 119, 4, p. 960-968

    Research output: Contribution to journalJournal articleResearchpeer-review

  28. Published

    The effect of in vitro simulated colonic pH gradients on microbial activity and metabolite production using common prebiotics as substrates

    Xie, Zhuqing, He, W., Gobbi, Alex, Bertram, H. C. & Nielsen, Dennis Sandris, 2024, In: BMC Microbiology. 24, 13 p., 83.

    Research output: Contribution to journalJournal articleResearchpeer-review

  29. Published

    Interspecific interactions facilitate keystone species in a multispecies biofilm that promotes plant growth

    Yang, Nan, Røder, Henriette Lyng, Wicaksono, W. A., Wassermann, B., Russel, J., Li, Xuan Ji, Nesme, Joseph, Berg, G., Sørensen, Søren Johannes & Burmølle, Mette, 2024, In: The ISME Journal. 18, 1, 15 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  30. Published

    A Stress Reduction Intervention for Lactating Mothers Alters Maternal Gut, Breast Milk, and Infant Gut Microbiomes: Data from a Randomized Controlled Trial

    Yu, J., Zhang, Y., Wells, J. C. K., Wei, Z., Bajaj-Elliott, M., Nielsen, Dennis Sandris & Fewtrell, M. S., 2024, In: Nutrients. 16, 7, 15 p., 1074.

    Research output: Contribution to journalJournal articleResearchpeer-review

  31. Published

    Enhancement of pyranoanthocyanin formation in blueberry wine with non-Saccharomyces yeasts

    Zhou, J., Tang, C., Zou, S., Lei, L., Wu, Y., Yang, W., Harindintwali, J. D., Zhang, J., Zeng, W., Deng, D., Zhao, M., Yu, X., Liu, X., Qiu, S. & Arneborg, Nils, 2024, In: Food Chemistry. 438, 10 p., 137956.

    Research output: Contribution to journalJournal articleResearchpeer-review

  32. Published

    Randomised, Placebo-Controlled Investigation of the Impact of Probiotic Consumption on Gut Microbiota Diversity and the Faecal Metabolome in Seniors

    van Zanten, G. C., Madsen, Anne Lundager, Yde, C. C., Krych, Lukasz, Yeung, N., Saarinen, M. T., Kot, Witold, Jensen, H. M., Rasmussen, Morten Arendt, Ouwehand, A. C. & Nielsen, Dennis Sandris, 2024, In: Microorganisms. 12, 4, 18 p., 796.

    Research output: Contribution to journalJournal articleResearchpeer-review

  33. 2023
  34. Published

    Oropharyngeal Microbiota Clusters in Children with Asthma or Wheeze Associate with Allergy, Blood Transcriptomic Immune Pathways, and Exacerbation Risk

    U-BIOPRED Study Group, U. S. G., 2023, In: American Journal of Respiratory and Critical Care Medicine. 208, 2, p. 142-154 13 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  35. Published
  36. Published

    The impact of bacterial exposure in early life on lung surfactant gene expression, function and respiratory rate in germ-free mice

    Barfod, Kenneth Klingenberg, Lui, J. C., Hansen, Signe Schmidt Kjølner, Sengupta, S., Zachariassen, L. S. F., Hansen, Axel Kornerup & Sørli, J. B., 2023, In: Frontiers in Microbiomes. 2, 12 p., 1085508.

    Research output: Contribution to journalJournal articleResearchpeer-review

  37. Published

    Effect of fermentation process on hygiene and perceived quality of lait caillé, an ethnic milk product from Burkina Faso

    Bayili, G. R., Konkobo-Yaméogo, C., Diarra, S., Diawara, B., Jespersen, Lene & Sawadogo-Lingani, H., 2023, In: Journal of Ethnic Foods. 10, 13 p., 17.

    Research output: Contribution to journalJournal articleResearchpeer-review

  38. Published

    Pulmonary toxicity and translocation of gallium phosphide nanowires to secondary organs following pulmonary exposure in mice

    Berthing, T., Lard, M., Danielsen, P. H., Abariute, L., Barfod, Kenneth Klingenberg, Adolfsson, K., Knudsen, K. B., Wolff, H., Prinz, C. N. & Vogel, U., 2023, In: Journal of Nanobiotechnology. 21, 18 p., 322.

    Research output: Contribution to journalJournal articleResearchpeer-review

  39. Published

    Atopic and non-atopic effects of fish oil supplementation during pregnancy

    Bisgaard, H., Mikkelsen, M., Rasmussen, Morten Arendt, Sevelsted, A., Schoos, Ann-Marie Malby, Brustad, N., Eliasen, A. U., Thorsen, J., Chawes, Bo Lund Krogsgaard, Gürdeniz, G., Morin, A., Stark, K., Stokholm, Jakob, Ober, C., Pedersen, C. E. T. & Bønnelykke, Klaus, 2023, In: Thorax. 78, 12, p. 1168–1174 7 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  40. Published
  41. Published

    Familiarity and identification of everyday food odors in older adults and their influence on hedonic liking

    Broge, Eva Honnens de Lichtenberg, Wendin, Karin Maria Elisabet, Rasmussen, Morten Arendt & Bredie, Wender, 2023, In: Food Quality and Preference. 103, 10 p., 104715.

    Research output: Contribution to journalJournal articleResearchpeer-review

  42. Published

    25-hydroxyvitamin D and risk of atopic diseases and infections in early childhood

    Brustad, N., Kim, M., Skov, F., Schoos, Ann-Marie Malby, Stokholm, Jakob, Bønnelykke, Klaus & Chawes, Bo Lund Krogsgaard, 2023, In: Allergy: European Journal of Allergy and Clinical Immunology. 78, 10, p. 2770-2773

    Research output: Contribution to journalComment/debateResearchpeer-review

  43. Published

    Diet-associated vertically transferred metabolites and risk of asthma, allergy, eczema, and infections in early childhood

    Brustad, N., Olarini, A., Kim, M., Chen, L., Ali, M., Wang, T., Cohen, A. S., Ernst, M., Hougaard, D., Schoos, Ann-Marie Malby, Stokholm, Jakob, Bønnelykke, Klaus, Lasky-Su, J., Rasmussen, Morten Arendt & Chawes, Bo Lund Krogsgaard, 2023, In: Pediatric Allergy and Immunology. 34, 2, 8 p., e13917.

    Research output: Contribution to journalJournal articleResearchpeer-review

  44. E-pub ahead of print

    The impact of botanical fermented foods on metabolic syndrome and type 2 diabetes: a systematic review of randomised controlled trials

    Chan, M., Larsen, Nadja, Baxter, H., Jespersen, Lene, Ekinci, E. I. & Howell, K., 2023, (E-pub ahead of print) In: Nutrition Research Reviews.

    Research output: Contribution to journalReviewResearchpeer-review

  45. Published

    High-throughput Amplicon Sequencing of Gut Microbiome Sea Cucumber in Pahang, Malaysia

    Choo, M. Y., Yusof, M. F., Kamal, S. S., Nielsen, Dennis Sandris & Ahmad, H. F., 2023, 3rd Symposium on Industrial Science and Technology, SISTEC 2021. Salim, N., Samah, N. A., Nazlan, R., Widia, M. & Sukadarin, E. H. (eds.). American Institute of Physics, 050009. (AIP Conference Proceedings, Vol. 2682).

    Research output: Chapter in Book/Report/Conference proceedingArticle in proceedingsResearchpeer-review

  46. Published

    Complete Genome Sequences of Three Lactiplantibacillus plantarum Strains Isolated from Traditional Iranian Raw Milk Motal Cheese

    Fatemizadeh, S. S., Krych, Lukasz, Castro-Mejía, J. L., Stefanova, Denitsa Vladimirova, Kot, Witold, Najafi, M. B. H. & Nielsen, Dennis Sandris, 2023, In: Microbiology Resource Announcements. 12, 1, 3 p., e0047922.

    Research output: Contribution to journalJournal articleResearchpeer-review

  47. Published

    Environment or genetic isolation? An atypical intestinal microbiota in the Maltese honey bee Apis mellifera spp. ruttneri

    Gaggìa, F., Jakobsen, Rasmus Riemer, Alberoni, D., Baffoni, L., Cutajar, S., Mifsud, D., Nielsen, Dennis Sandris & Di Gioia, D., 2023, In: Frontiers in Microbiology. 14, 15 p., 1127717.

    Research output: Contribution to journalJournal articleResearchpeer-review

  48. Published

    Gut microbiota maturity mediates the protective effect of siblings on food allergy

    Gao, Y., Stokholm, Jakob, O'Hely, M., Ponsonby, A. L., Tang, M. L. K., Ranganathan, S., Saffery, R., Harrison, L. C., Collier, F., Gray, L., Burgner, D., Molloy, J., Sly, P. D., Brix, S., Frøkiær, Hanne, Vuillermin, P. & BIS Investigator Group, B. I. G., 2023, In: Journal of Allergy and Clinical Immunology. 152, 3, p. 667-675 9 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  49. Published

    Diversity and succession of contaminating yeasts in white-brined cheese during cold storage

    Geronikou, Athina, Larsen, Nadja, Lillevang, S. K. & Jespersen, Lene, 2023, In: Food Microbiology. 113, 10 p., 104266.

    Research output: Contribution to journalJournal articleResearchpeer-review

  50. Published

    Age-related effects on the modulation of gut microbiota by pectins and their derivatives: an in vitro study

    Gu, Fangjie, Larsen, Nadja, Pascale, N., Petersen, S. A., Khakimov, Bekzod, Respondek, F. & Jespersen, Lene, 2023, In: Frontiers in Microbiology. 14, 14 p., 1207837.

    Research output: Contribution to journalJournal articleResearchpeer-review

  51. Published

    Evidence-based health interventions for the educational sector: Application and lessons learned from developing European food hygiene and safety teaching resources

    Hann, M., Hayes, C. V., Lacroix-Hugues, V., Touboul Lundgren, P., McNulty, C., Syeda, R., Eley, C., Teixeira, P., Gennimata, D., Truninger, M., Knoechel, Susanne, Münter, L., Allison, R., Fehér, Á., Izsó, T., Kunszabó, A., Kasza, G. & Demirjian, A., 2023, In: Food Control. 143, 9 p., 109219.

    Research output: Contribution to journalJournal articleResearchpeer-review

  52. Published

    Maternal antibiotic exposure increases total islet number and volume in the neonatal pancreas and reduces HbA1c and insulitis in adult female non-obese diabetic mice

    Hansen, Camilla Hartmann Friis, Haupt-Jorgensen, M., Buschard, K., Pakkenberg, B., Krych, Lukasz & Hansen, Axel Kornerup, 2023, In: Clinical and Translational Discovery. 3, 2, 13 p., e188.

    Research output: Contribution to journalJournal articleResearchpeer-review

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