Food Microbiology, Gut Health, and Fermentation

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  1. 2019
  2. Published

    Impact of Early Exposure to Cefuroxime on the Composition of the Gut Microbiota in Infants Following Cesarean Delivery

    Kamal, S. S., Hyldig, N., Krych, Lukasz, Greisen, Gorm, Krogfelt, K. A., Zachariassen, G. & Nielsen, Dennis Sandris, 2019, In: Journal of Pediatrics. 210, p. 99-105, e1-e2

    Research output: Contribution to journal › Journal article › Research › peer-review

  3. Published

    Impact of botanical fermented foods on metabolic biomarkers and gut microbiota in adults with metabolic syndrome and type 2 diabetes: a systematic review protocol

    Chan, M., Baxter, H., Larsen, Nadja, Jespersen, Lene, Ekinci, E. I. & Howell, K., 2019, In: BMJ Open. 9, 7, 5 p., e029242.

    Research output: Contribution to journal › Review › Research › peer-review

  4. Published

    Investigating risk of suboptimal macro and micronutrient intake and their determinants in older Danish adults with specific focus on protein intake — a cross-sectional study

    Schacht, Simon Rønnow, Lind, M. V., Bechshøft, R. L., Højfeldt, Grith Stougaard, Reitelseder, S., Jensen, T., Jespersen, Astrid Pernille, Nielsen, Dennis Sandris, Holm, L. & Tetens, Inge , 2019, In: Nutrients. 11, 4, 14 p., 795.

    Research output: Contribution to journal › Journal article › Research › peer-review

  5. Published

    Isolation and characterization of bacteriophages active against methicillin-resistant Staphylococcus pseudintermedius

    Moodley, Arshnee, Kot, W., Nälgård, S., Jakociune, D., Neve, H., Hansen, L. H., Guardabassi, Luca & Vogensen, Finn Kvist, 2019, In: Research in Veterinary Science. 122, p. 81-85 5 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  6. Published

    Kombucha beverage from green, black and rooibos teas: a comparative study looking at microbiology, chemistry and antioxidant activity

    Gaggìa, F., Baffoni, L., Galiano, M., Nielsen, Dennis Sandris, Jakobsen, Rasmus Riemer, Castro-Mejía, J. L., Bosi, S., Truzzi, F., Musumeci, F., Dinelli, G. & Di Gioia, D., 2019, In: Nutrients. 11, 1, p. 1-22 1.

    Research output: Contribution to journal › Journal article › Research › peer-review

  7. Published

    Lactose and Bovine Milk Oligosaccharides Synergistically Stimulate B. longum subsp. longum Growth in a Simplified Model of the Infant Gut Microbiome

    Jakobsen, L. M. A., Sundekilde, U. K., Andersen, H. J., Nielsen, Dennis Sandris & Bertram, H. C., 2019, In: Journal of Proteome Research. 18, 8, p. 3086-3098

    Research output: Contribution to journal › Journal article › Research › peer-review

  8. Published

    Linking cocoa varietals and microbial diversity of Nicaraguan fine cocoa bean fermentations and their impact on final cocoa quality appreciation

    Papalexandratou, Z., Kaasik, K., Kauffmann, L. V., Skorstengaard, A., Bouillon, G., Espensen, J. L., Hansen, L. H., Jakobsen, Rasmus Riemer, Blennow, Andreas, Krych, Lukasz, Castro-Mejía, J. L. & Nielsen, Dennis Sandris, 2019, In: International Journal of Food Microbiology. 304, p. 106-118

    Research output: Contribution to journal › Journal article › Research › peer-review

  9. Published

    Low-moisture food matrices as probiotic carriers

    Marcial-Coba, M. S., Knoechel, Susanne & Nielsen, Dennis Sandris, 2019, In: FEMS Microbiology Letters. 366, 2, 11 p., fnz006.

    Research output: Contribution to journal › Review › Research › peer-review

  10. Published

    Maternal and fetal genetic effects on birth weight and their relevance to cardio-metabolic risk factors

    Stokholm, Jakob, Michaelsen, Kim F., Freathy, R. M. & EGG Consortium, E. C., 2019, In: Nature Genetics. 51, 5, p. 804-814

    Research output: Contribution to journal › Journal article › Research › peer-review

  11. Published

    Microbial Ecology of Fermented Foods: Case Studies from Industrialized and Household Productions

    Johansen, P. G., 2019, Department of Food Science, Faculty of Science, University of Copenhagen.

    Research output: Book/Report › Ph.D. thesis › Research

  12. Published

    Microbial biofilm communities on Reverse Osmosis membranes in whey water processing before and after cleaning

    Vitzilaiou, E., Stoica, I. & Knoechel, Susanne, 2019, In: Journal of Membrane Science. 587, 8 p., 117174.

    Research output: Contribution to journal › Journal article › Research › peer-review

  13. Published

    Modulation of gut microbiota from healthy-weight and obese individuals by pectin, by-products of tropical fruits and probiotic strains

    Bianchi, F., 2019, Department of Food Science, Faculty of Science, University of Copenhagen. 219 p.

    Research output: Book/Report › Ph.D. thesis › Research

  14. Published

    Mouse vendor influence on the bacterial and viral gut composition exceeds the effect of diet

    Rasmussen, Torben Sølbeck, de Vries, L., Kot, Witold, Hansen, Lars Hestbjerg, Castro-Mejía, J. L., Vogensen, Finn Kvist, Hansen, Axel Kornerup & Nielsen, Dennis Sandris, 2019, In: Viruses. 11, 5, 15 p., 435.

    Research output: Contribution to journal › Journal article › Research › peer-review

  15. Published

    Novel isolates of Streptococcus thermophilus bacteriophages from group 5093 identified with an improved multiplex PCR typing method

    Szymczak, P., Vogensen, Finn Kvist & Janzen, T., 2019, In: International Dairy Journal. 91, p. 18-24 7 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  16. Published

    Oat bran, but not its isolated bioactive β-glucans or polyphenols, have a bifidogenic effect in an in vitro fermentation model of the gut microbiota

    Kristek, A., Wiese, M., Heuer, P., Kosik, O., Schär, M. Y., Soycan, G., Alsharif, S., Kuhnle, G. G. C., Walton, G. & Spencer, J. P. E., 2019, In: British Journal of Nutrition. 121, 5, p. 549-559

    Research output: Contribution to journal › Journal article › Research › peer-review

  17. Published

    Occurrence and Importance of Yeasts in Indigenous Fermented Food and Beverages Produced in Sub-Saharan Africa

    Johansen, P. G., Owusu-Kwarteng, J., Parkouda, C., Padonou, S. W. & Jespersen, Lene, 2019, In: Frontiers in Microbiology. 10, 22 p., 1789.

    Research output: Contribution to journal › Review › Research › peer-review

  18. Published

    Oral LPS Dosing Induces Local Immunological Changes in the Pancreatic Lymph Nodes in Mice

    Kihl, Pernille, Krych, Lukasz, Deng, Ling, Kildemoes, A. O., Laigaard, A., Hansen, L. H., Hansen, Camilla Hartmann Friis, Buschard, K., Nielsen, Dennis Sandris & Hansen, Axel Kornerup, 2019, In: Journal of Diabetes Research. 2019, 9 p., 1649279.

    Research output: Contribution to journal › Journal article › Research › peer-review

  19. Published

    Potential of Pectins to Beneficially Modulate the Gut Microbiota Depends on Their Structural Properties

    Larsen, Nadja, de Souza, C. B., Krych, Lukasz, Cahú, T. B., Wiese, M., Kot, W., Hansen, K. M., Blennow, Andreas, Venema, K. & Jespersen, Lene, 2019, In: Frontiers in Microbiology. 10, p. 1-13 223.

    Research output: Contribution to journal › Journal article › Research › peer-review

  20. Published

    Prebiotic Effect of Lycopene and Dark Chocolate on Gut Microbiome with Systemic Changes in Liver Metabolism, Skeletal Muscles and Skin in Moderately Obese Persons

    Wiese, M., Bashmakov, Y., Chalyk, N., Nielsen, Dennis Sandris, Krych, Lukasz, Kot, W., Klochkov, V., Pristensky, D., Bandaletova, T., Chernyshova, M., Kyle, N. & Petyaev, I., 2019, In: BioMed Research International. 2019, 15 p., 4625279.

    Research output: Contribution to journal › Journal article › Research › peer-review

  21. Published

    Preterm Birth Has Effects on Gut Colonization in Piglets Within the First 4 Weeks of Life

    Kamal, S. S., Andersen, A. D., Krych, Lukasz, Lauridsen, C., Sangild, Per Torp, Thymann, Thomas & Nielsen, Dennis Sandris, 2019, In: Journal of Pediatric Gastroenterology and Nutrition. 68, 5, p. 727-733 7 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  22. Published

    Red-Brown Pigmentation of Acidipropionibacterium jensenii is Tied to Haemolytic Activity and cyl-Like Gene Cluster

    Deptula, Paulina, Loivamaa, I., Smolander, O. P., Laine, P., Roberts, R. J., Piironen, V., Paulin, L., Savijoki, K., Auvinen, P. & Varmanen, P., 2019, In: Microorganisms. 7, 11, 15 p., 512.

    Research output: Contribution to journal › Journal article › Research › peer-review

  23. Published

    Severe gut microbiota dysbiosis caused by malnourishment can be partly restored during 3 weeks of refeeding with fortified corn-soy-blend in a piglet model of childhood malnutrition

    Leng, B., Sørensen, M. B., Kot, W., Thymann, Thomas, Krych, Lukasz & Nielsen, Dennis Sandris, 2019, In: BMC Microbiology. 19, 9 p., 277.

    Research output: Contribution to journal › Journal article › Research › peer-review

  24. Published

    Short communication: Gut microbial colonization of the mouse colon using faecal transfer was equally effective when comparing rectal inoculation and oral inoculation based on 16S rRNA sequencing

    Lützhøft, Ditte Olsen, Sánchez-Alcoholado, L., Tougaard, P., Mentzel, Caroline M. Junker, Kot, Witold, Nielsen, Dennis Sandris & Hansen, Axel Kornerup, 2019, In: Research in Veterinary Science. 126, p. 227-232 6 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  25. Published

    Supplementation of Sesamin Alleviates Stress-Induced Behavioral and Psychological Disorders via Reshaping the Gut Microbiota Structure

    Wang, Q., Jia, M., Zhao, Y., Hui, Y., Pan, J., Yu, H., Yan, S., Dai, X., Liu, X. & Liu, Z., 2019, In: Journal of Agricultural and Food Chemistry. 67, 45, p. 12441-12451 11 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  26. Published

    Surface engineered bacteria as Pickering stabilizers for foams and emulsions

    Jiang, X., Yücel Falco, C., Dalby, K. N., Siegumfeldt, Henrik, Arneborg, Nils & Risbo, Jens, 2019, In: Food Hydrocolloids. 89, p. 224-233 10 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  27. Published

    TL1A Aggravates Cytokine-Induced Acute Gut Inflammation and Potentiates Infiltration of Intraepithelial Natural Killer Cells in Mice

    Tougaard, P., Martinsen, L. O., Zachariassen, L. F., Krych, Lukasz, Nielsen, Dennis Sandris, Buus, Terkild Brink, Pedersen, Anders Elm, Hansen, Axel Kornerup, Skov, Søren & Hansen, Camilla Hartmann Friis, 2019, In: Inflammatory Bowel Diseases. 25, 3, p. 510-523

    Research output: Contribution to journal › Journal article › Research › peer-review

  28. Published

    Targeting gut microbiota and barrier function with prebiotics to alleviate autoimmune manifestations in NOD mice

    Hansen, Camilla Hartmann Friis, Larsen, C. S., Petersson, H. O., Zachariassen, L. F., Vegge, A., Lauridsen, C., Kot, W., Krych, Lukasz, Nielsen, Dennis Sandris & Hansen, Axel Kornerup, 2019, In: Diabetologia. 62, 9, p. 1689-1700

    Research output: Contribution to journal › Journal article › Research › peer-review

  29. Published

    The Gut Microbiome of Older Danish Adults – with Particular Focus on the Gut Mycobiome

    Bin Ahmad, H. F., 2019, Department of Food Science, Faculty of Science, University of Copenhagen. 199 p.

    Research output: Book/Report › Ph.D. thesis › Research

  30. Published

    The gut microbiome on a periodized low-protein diet is associated with improved metabolic health

    Li, Z., Rasmussen, Torben Sølbeck, Rasmussen, M. L., Li, J., Henriquez-Olguín, Carlos, Kot, W., Nielsen, Dennis Sandris & Jensen, Thomas Elbenhardt, 2019, In: Frontiers in Microbiology. 10, 10 p., 709.

    Research output: Contribution to journal › Journal article › Research › peer-review

  31. Published

    The potential of pectin to impact pig nutrition and health: feeding the animal and its microbiome

    Wiese, M., 2019, In: FEMS Microbiology Letters. 366, 4, p. 1-15 fnz029.

    Research output: Contribution to journal › Journal article › Research › peer-review

  32. 2018
  33. Published

    Cell Wall Glycans Mediate Recognition of the Dairy Bacterium Streptococcus thermophilus by Bacteriophages

    Szymczak, P., Filipe, S. R., Covas, G., Vogensen, Finn Kvist, Neves, A. R. & Janzen, T., 1 Dec 2018, In: Applied and Environmental Microbiology. 84, 23, 15 p., e01847-18.

    Research output: Contribution to journal › Journal article › Research › peer-review

  34. Published

    Occurrence of lactic acid bacteria and yeasts at species and strain level during spontaneous fermentation of mawè, a cereal dough produced in West Africa

    Houngbédji, M., Johansen, P., Padonou, S. W., Akissoe, N., Arneborg, Nils, Nielsen, Dennis Sandris, Hounhouigan, D. J. & Jespersen, Lene, Dec 2018, In: Food Microbiology. 76, p. 267-278 12 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  35. Published

    Postnatal Administration of Lactobacillus rhamnosus HN001 Ameliorates Perinatal Broad-Spectrum Antibiotic-Induced Reduction in Myelopoiesis and T Cell Activation in Mouse Pups

    Fuglsang, E., Krych, Lukasz, Lundsager, M. T., Nielsen, Dennis Sandris & Frøkiær, Hanne, Nov 2018, In: Molecular Nutrition and Food Research. 62, 22, p. 1-12 1800510.

    Research output: Contribution to journal › Journal article › Research › peer-review

  36. Published

    Bovine Milk Oligosaccharides with Sialyllactose for Preterm Piglets

    Obelitz-Ryom, K., Rendboe, A. K., Nguyen, Duc Ninh, Rudloff, S., Brandt, A. B., Nielsen, Dennis Sandris, Heckmann, A. B., Chichlowski, M., Sangild, Per Torp, Thymann, Thomas & Bering, S. B., 12 Oct 2018, In: Nutrients. 10, 10, p. 1-18 1489.

    Research output: Contribution to journal › Journal article › Research › peer-review

  37. Published

    A culture-independent method for studying transfer of IncI1 plasmids from wild-type Escherichia coli in complex microbial communities

    Anjum, M., Madsen, Jonas Stenløkke, Espinosa-Gongora, C., Jana, B., Wiese, M., Nielsen, Dennis Sandris, Sørensen, Søren Johannes, Moodley, Arshnee, Bortolaia, V. & Guardabassi, Luca, Sep 2018, In: Journal of Microbiological Methods. 152, p. 18-26 9 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  38. Published

    Erratum: Formation of a viral replication focus in Sulfolobus cells infected by the rudivirus Sulfolobus islandicus rod-shaped virus 2 [Journal of Virology, 91, 13, (2017), (e00486-17)] DOI:10.1128/JVI.00486-17

    Martinez Alvarez, Laura, Deng, Ling & Peng, Xu, 1 Apr 2018, In: Journal of Virology. 92, 7, e01991-17.

    Research output: Contribution to journal › Comment/debate › Research › peer-review

  39. Published

    In vitro studies of the impact of pectins on adhesion of Lactobacillus spp. to human epithelial cells and intestinal barrier integrity

    Srimahaeak, T., Bianchi, F., Chlumsky, O., Sivieri, K., Hansen, K. M., Leser, T., Larsen, Nadja & Jespersen, Lene, 2018.

    Research output: Contribution to conference › Poster › Research › peer-review

  40. Published

    Lactococcus lactis SK1virus Taxonomy and Development of High-Throughput qPCR Methods to Evaluate SK1virus Development in Dairies Using Undefined Starter Cultures

    Liu, C., 2018, Department of Food Science, Faculty of Science, University of Copenhagen.

    Research output: Book/Report › Ph.D. thesis › Research

  41. Published

    A bacteriophage cocktail targeting Escherichia coli reduces E. coli in simulated gut conditions, while preserving a non-targeted representative commensal normal microbiota

    Cieplak, T., Soffer, N., Sulakvelidze, A. & Nielsen, Dennis Sandris, 2018, In: Gut Microbes. 9, 5, p. 391-399 9 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  42. Published

    A prebiotic intervention study in children with autism spectrum disorders (ASDs)

    Grimaldi, R., Gibson, G. R., Vulevic, J., Giallourou, N., Castro Mejia, J. L., Hansen, L. H., Gibson, E. L., Nielsen, Dennis Sandris & Costabile, A., 2018, In: Microbiome. 6, 13 p., 133.

    Research output: Contribution to journal › Journal article › Research › peer-review

  43. Published

    Biofouling on RO-membranes used for water recovery in the dairy industry

    Stoica, I., Vitzilaiou, E., Røder, Henriette Lyng, Burmølle, Mette, Thaysen, D., Knoechel, Susanne & van der Berg, Franciscus Winfried J, 2018, In: Journal of Water Process Engineering. 24, p. 1-10 10 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  44. Published

    Can the addition of sugars boost non-starter lactic acid bacteria growth and accelerate cheese ripening?

    Møller, C. O. D. A., Czárán, T., Siegumfeldt, Henrik, Christensen, B. B. & Rattray, F. P., 2018. 1 p.

    Research output: Contribution to conference › Poster › Research

  45. Published

    Changes in Gut Microbiota Prior to Influenza A Virus Infection Do Not Affect Immune Responses in Pups or Juvenile Mice

    Fuglsang, E., Pizzolla, A., Krych, Lukasz, Nielsen, Dennis Sandris, Brooks, A. G., Frøkiær, Hanne & Reading, P. C., 2018, In: Frontiers in Cellular and Infection Microbiology. 8, 16 p., 319.

    Research output: Contribution to journal › Journal article › Research › peer-review

  46. Published

    Characterisation of halotolerant and halophilic yeasts from cheese brines from Danish dairies producing semi-hard surface-ripened cheese

    Malskær, A. H., Johansen, P., Kanz, L. T., Arneborg, Nils & Jespersen, Lene, 2018.

    Research output: Contribution to conference › Poster › Research › peer-review

  47. Published

    Characterisation of halotolerant and halophilic yeasts isolated from Danish cheese brines

    Johansen, P., Malskær, A. H., Huang, C., Zhang, L., Kanz, L. T., Arneborg, Nils & Jespersen, Lene, 2018.

    Research output: Contribution to conference › Poster › Research › peer-review

  48. Published

    Cheese brines from Danish dairies reveal a complex microbiota comprising several halotolerant bacteria and yeasts

    Haastrup, M. K., Johansen, P., Malskær, A. H., Castro-Mejía, J. L., Kot, W., Krych, Lukasz, Arneborg, Nils & Jespersen, Lene, 2018, In: International Journal of Food Microbiology. 285, p. 173-187 15 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  49. Published

    Chemical characterization by gas chromatography-mass spectrometry and inductively coupled plasma-optical emissionn spectroscopy of membrane permeates from an industrial dairy ingredient production used as process water

    Skou, P. B., Khakimov, Bekzod, Hansen, Thomas Hesselhøj, Aunsbjerg, S. D., Knoechel, Susanne, Thaysen, D. & van der Berg, Franciscus Winfried J, 2018, In: Journal of Dairy Science. 101, 1, p. 135-146 12 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  50. Published

    Chemometric Analysis of NMR Spectra

    Ebrahimi, Parvaneh, Viereck, Nanna, Bro, Rasmus & Engelsen, Søren Balling, 2018, Modern Magnetic Resonance. A. Webb, G. (ed.). 2. ed. ed. Springer, p. 1649-1668 20 p.

    Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review

  51. Published

    CoMiniGut - a small volume in vitro colon model for the screening of gut microbial fermentation processes

    Wiese, M., Khakimov, Bekzod, Nielsen, S., Sørensen, H., van der Berg, Franciscus Winfried J & Nielsen, Dennis Sandris, 2018, In: PeerJ. 6, 22 p., e4268.

    Research output: Contribution to journal › Journal article › Research › peer-review

  52. Published

    Comparison of oxidative stress response and biofilm formation of Listeria monocytogenes serotypes 4b and 1/2a

    Huang, Y., Morvay, A. A., Shi, X., Sou, Y., Shi, C. & Knoechel, Susanne, 2018, In: Food Control. 85, p. 416-422 7 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  53. Published

    Could the addition of sugars boost bacterial interaction and accelerate cheese ripening time?

    Møller, C. O. D. A., Siegumfeldt, Henrik, Czárán, T. L., Christensen, B. & Rattray, F. P., 2018, p. 61. 1 p.

    Research output: Contribution to conference › Conference abstract for conference › Research

  54. Published

    Effect of GAPDH-derived antimicrobial peptides on sensitive yeasts cells: membrane permeability, intracellular pH and H+-influx/-efflux rates

    Branco, P., Albergaria, H., Arneborg, Nils & Prista, C., 2018, In: FEMS Yeast Research. 18, 3, p. 1-8 foy030.

    Research output: Contribution to journal › Journal article › Research › peer-review

  55. Published

    Effect of the dietary polyacetylenes falcarinol and falcarindiol on the gut microbiota composition in a rat model of colorectal cancer

    Kobaek-Larsen, M., Nielsen, Dennis Sandris, Kot, W., Krych, Lukasz, Christensen, L. P. & Baatrup, G., 2018, In: BMC Research Notes. 11, p. 1-6 411.

    Research output: Contribution to journal › Journal article › Research › peer-review

  56. Published

    Exploring the microbiota from cheese brines at Danish dairies by culture dependent and independent techniques

    Johansen, P., Malskær, A. H., Haastrup, M. K., Castro Mejia, J. L., Kot, W., Krych, Lukasz, Arneborg, Nils & Arneborg, Nils, 2018.

    Research output: Contribution to conference › Poster › Research › peer-review

  57. Published

    Extraction and purification of viruses from fecal samples for metagenome and morphology analyses

    Castro-Mejía, J. L., Deng, Ling, Vogensen, Finn Kvist, Reyes, A. & Nielsen, Dennis Sandris, 2018, The Human Virome: Methods and Protocols. Moya, A. & Brocal, V. P. (eds.). Humana Press, p. 49-57 9 p. (Methods in Molecular Biology, Vol. 1838).

    Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review

  58. Published

    Genetic manipulation of structural color in bacterial colonies

    Johansen, V. E., Catón, L., Hamidjaja, R., Oosterink, E., Wilts, B. D., Rasmussen, Torben Sølbeck, Sherlock, M. M., Ingham, C. J. & Vignolini, S., 2018, In: Proceedings of the National Academy of Sciences of the United States of America. 115, 11, p. 2652-2657 6 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  59. Published

    Gut microbiota recovery and immune response in ampicillin-treated mice

    Castro Mejia, J. L., Jakesevic, M., Fabricius, N. F., Krych, Lukasz, Nielsen, Dennis Sandris, Kot, W., Bendtsen, K. M. B., Vogensen, Finn Kvist, Hansen, Camilla Hartmann Friis & Hansen, Axel Kornerup, 2018, In: Research in Veterinary Science. 118, p. 357-364 8 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  60. Published

    Have you tried spermine? A rapid and cost-effective method to eliminate dextran sodium sulfate inhibition of PCR and RT-PCR

    Krych, Lukasz, Kot, W., Bendtsen, K. M. B., Hansen, Axel Kornerup, Vogensen, Finn Kvist & Nielsen, Dennis Sandris, 2018, In: Journal of Microbiological Methods. 144, p. 1-7 7 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  61. Published

    Influenza A Virus Infection Alters Gut Microbiota Composition in Juvenile Mice

    Fuglsang, E., Krych, Lukasz, Nielsen, Dennis Sandris, Frøkiær, Hanne & Reading, P. C., 2018, In: Journal of Infectious Diseases & Travel Medicine. 2, 3, 10 p., 000118.

    Research output: Contribution to journal › Journal article › Research › peer-review

  62. Published

    Ingestion of an Inulin-Enriched Pork Sausage Product Positively Modulates the Gut Microbiome and Metabolome of Healthy Rats

    Thøgersen, R., Castro-Mejía, J. L., Sundekilde, U. K., Hansen, L. H., Hansen, Axel Kornerup, Nielsen, Dennis Sandris & Bertram, H. C., 2018, In: Molecular Nutrition and Food Research. 62, 19, p. 1-10 1800608.

    Research output: Contribution to journal › Journal article › Research › peer-review

  63. Published

    Investigation of the bacteriophage community in induced lysates of undefined mesophilic mixed-strain DL-cultures using classical and metagenomic approaches

    Muhammed, Musemma Kedir, Olsen, M. L., Kot, Witold, Neve, H., Castro Mejia, J. L., Janzen, T., Hansen, L. H., Nielsen, Dennis Sandris, Sørensen, Søren Johannes, Heller, K. J. & Vogensen, Finn Kvist, 2018, In: International Journal of Food Microbiology. 272, p. 61-72 12 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  64. Published

    Lacto-fermented sauerkraut improves symptoms in IBS patients independent of product pasteurisation - a pilot study

    Nielsen, E. S., Garnås, E., Jensen, K. J., Hansen, L. H., Olsen, P. S., Ritz, C., Krych, Lukasz & Nielsen, Dennis Sandris, 2018, In: Food & Function. 9, 10, p. 5323-5335 13 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  65. Published

    Long-term Western diet fed apolipoprotein E-deficient rats exhibit only modest early atherosclerotic characteristics

    Rune, Ida, Rolin, B., Lykkesfeldt, Jens, Nielsen, Dennis Sandris, Krych, Lukasz, Kanter, J. E., Bornfeldt, K. E., Kihl, Pernille, Buschard, K., Josefsen, K., Fels, J. J., Mortensen, A., Christoffersen, B., Kirk, R. K. & Hansen, Axel Kornerup, 2018, In: Scientific Reports. 8, 1, 12 p., 5416.

    Research output: Contribution to journal › Journal article › Research › peer-review

  66. Published

    Low glycaemic index foods from wild barley and amylose-only barley lines

    Sagnelli, D., Chessa, S., Mandalari, G., Di Martino, M., Sorndech, W., Mamone, G., Vincze, E., Buillon, G., Nielsen, Dennis Sandris, Wiese, M., Blennow, Andreas & Hebelstrup, K. H., 2018, In: Journal of Functional Foods. 40, p. 408-416 9 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  67. Published

    Metabolic footprint analysis of metabolites that discriminate single and mixed yeast cultures at two key time-points during mixed culture alcoholic fermentations

    Peng, C., Viana, T. M. L., Petersen, Mikael Agerlin, Larsen, F. H. & Arneborg, Nils, 2018, In: Metabolomics. 14, 7, 12 p., 93.

    Research output: Contribution to journal › Journal article › Research › peer-review

  68. Published

    Metabolomics and proteomics insights into yeast physiological dynamics during single and mixed alcoholic fermentations

    Peng, C., 2018, Department of Food Science, Faculty of Science, University of Copenhagen.

    Research output: Book/Report › Ph.D. thesis › Research

  69. Published

    Modelling the influence of metabolite diffusion on non-starter lactic acid bacteria growth in ripening Cheddar cheese

    Czárán, T., Rattray, F. P., Møller, C. O. D. A. & Christensen, B. B., 2018, In: International Dairy Journal. 80, p. 35-45 11 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  70. Published

    Modulation of gut microbiota from obese individuals by in vitro fermentation of citrus pectin in combination with Bifidobacterium longum BB-46

    Bianchi, F., Larsen, Nadja, de Mello Tieghi, T., Tallarico Adorno, M. A., Kot, W., Saad, S. M. I., Jespersen, Lene & Sivieri, K., 2018, In: Applied Microbiology and Biotechnology. 102, 20, p. 8827-8840 14 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  71. Published

    Neonatal gut and immune maturation is determined more by postnatal age than by postconceptional age in moderately preterm pigs

    Ren, S., Hui, Y., Obelitz-Ryom, K., Brandt, A. B., Kot, W., Nielsen, Dennis Sandris, Thymann, Thomas, Sangild, Per Torp & Nguyen, Duc Ninh, 2018, In: American Journal of Physiology: Gastrointestinal and Liver Physiology. 315, 5, p. G855-G867

    Research output: Contribution to journal › Journal article › Research › peer-review

  72. Published

    Oral insulin does not alter gut microbiota composition of NOD mice

    Kihl, Pernille, Krych, Lukasz, Buschard, K., Wesley, J. D., Kot, W., Hansen, Axel Kornerup, Nielsen, Dennis Sandris & von Herrath, M. G., 2018, In: Diabetes/Metabolism Research and Reviews. 34, 6, 9 p., e3010.

    Research output: Contribution to journal › Journal article › Research › peer-review

  73. Published

    Prevalence and characteristics of Listeria monocytogenes isolates in raw milk, heated milk and Nunu, a spontaneously fermented milk beverage in Ghana

    Owusu-Kwarteng, J., Wuni, A., Akabanda, F. & Jespersen, Lene, 2018, In: Beverages. 4, 2, 10 p., 40.

    Research output: Contribution to journal › Journal article › Research › peer-review

  74. Published

    Rheological and sensory properties and aroma compounds formed during ripening of soft brined cheese made from camel milk

    Alemu, Y. H., Hansen, E. B., Seifu, E., Petersen, Mikael Agerlin, Lametsch, Rene, Rattray, F. P. & Ipsen, Richard, 2018, In: International Dairy Journal. 81, p. 122-130 9 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  75. Published

    Some technological properties of selected strains of Bacillus spp. associated with kantong production in Ghana

    Glover, R. L. K., Madilo, F. K., Terlabie, J. L., Ametefe, E. N. & Jespersen, Lene, 2018, In: International Food Research Journal. 25, 2, p. 602-611 10 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  76. Published

    The Antibacterial Effect In Vitro of Honey Derived from Various Danish Flora

    Matzen, R. D., Leth-Espensen, J. Z., Jansson, T., Nielsen, Dennis Sandris, Lund, Marianne N. & Matzen, S. H., 2018, In: Dermatology Research and Practice. 2018, 10 p., 7021713.

    Research output: Contribution to journal › Journal article › Research › peer-review

  77. Published

    The Smallest Intestine (TSI) - a low volume in vitro model of the small intestine with increased throughput

    Cieplak, T., Wiese, M., Nielsen, S., Van De Wiele, T., van der Berg, Franciscus Winfried J & Nielsen, Dennis Sandris, 2018, In: FEMS Microbiology Letters. 365, 21, p. 1-8 fny231.

    Research output: Contribution to journal › Journal article › Research › peer-review

  78. Published

    The effect of pectins on survival of probiotic Lactobacillus spp. in gastrointestinal juices is related to their structure and physical properties

    Larsen, Nadja, Cahú, T. B., Saad, S. M. I., Blennow, Andreas & Jespersen, Lene, 2018, In: Food Microbiology. 74, p. 11-20 10 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  79. Published

    Understanding the prebiotic potential of different dietary fibers using an in vitro continuous adult fermentation model (PolyFermS)

    Poeker, S. A., Geirnaert, A., Berchtold, L., Greppi, A., Krych, Lukasz, Steinert, R. E., de Wouters, T. & Lacroix, C., 2018, In: Scientific Reports. 8, 12 p., 4318 .

    Research output: Contribution to journal › Journal article › Research › peer-review

  80. Published

    Viability and physiological responses of yeasts exposed to stress conditions occurring in West African fermented cereal doughs

    Johansen, P., Houngbedji, M., Padonou, S. W., Hounhouigan, J. D., Siegumfeldt, Henrik & Jespersen, Lene, 2018.

    Research output: Contribution to conference › Poster › Research › peer-review

  81. Published

    Viability and physiological responses of yeasts exposed to stress conditions of West African fermented cereal doughs

    Houngbedji, M., Johansen, P., Padonou, S. W., Siegumfeldt, Henrik, Hounhouigan, J. & Jespersen, Lene, 2018.

    Research output: Contribution to conference › Poster › Research › peer-review

  82. Published

    Viability of microencapsulated Akkermansia muciniphila and Lactobacillus plantarum during freeze-drying, storage and in vitro simulated upper gastrointestinal tract passage

    Marcial-Coba, M. S., Cieplak, T., Cahú, T. B., Blennow, Andreas, Knoechel, Susanne & Nielsen, Dennis Sandris, 2018, In: Food & Function. 9, 11, p. 5868-5879

    Research output: Contribution to journal › Journal article › Research › peer-review

  83. 2017
  84. Published

    Distribution of Nerve Fibers in Human Bone and their Association to Bone Remodeling Events and Vascular Structures.

    Sayilekshmy, M., Hansen, R. R., Delaisse, J., Rolighed, L., Heegaard, Anne-Marie & Andersen, T. L., Dec 2017, In: Journal of Bone and Mineral Research. 32, p. S196-S196

    Research output: Contribution to journal › Conference abstract in journal › Research › peer-review

  85. Published

    Oral administration of Lactobacillus paracasei L9 attenuates pm2.5-induced enhancement of airway hyperresponsiveness and allergic airway response in murine model of asthma

    Wang, X., Hui, Y., Zhao, L., Hao, Y., Guo, H. & Ren, F., Feb 2017, In: PLoS ONE. 12, 2, e0171721.

    Research output: Contribution to journal › Journal article › Research › peer-review

  86. Published

    Saccharomyces cerevisiae accumulates GAPDH-derived peptides on its cell surface that induce death of non-Saccharomyces yeasts by cell-to-cell contact

    Branco, P., Kemsawasd, V., Santos, L., Diniz, M., Caldeira, J., Almeida, M. G., Arneborg, Nils & Albergaria, H., 2017, In: F E M S Microbiology Ecology. 93, 5, 10 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  87. Published

    A high-throughput qPCR system for simultaneous quantitative detection of dairy Lactococcus lactis and Leuconostoc bacteriophages

    Muhammed, Musemma Kedir, Krych, Lukasz, Nielsen, Dennis Sandris & Vogensen, Finn Kvist, 2017, In: PLOS ONE. 12, 3, 12 p., e0174223.

    Research output: Contribution to journal › Journal article › Research › peer-review

  88. Published

    A polyphenol-enriched diet and Ascaris suum infection modulate mucosal immune responses and gut microbiota composition in pigs

    Williams, Andrew Richard, Krych, Lukasz, Fauzan Ahmad, H., Nejsum, P., Skovgaard, K., Nielsen, Dennis Sandris & Thamsborg, Stig Milan, 2017, In: PLOS ONE. 12, 10, 21 p., e0186546.

    Research output: Contribution to journal › Journal article › Research › peer-review

  89. Published

    Antimicrobial properties and death-inducing mechanisms of saccharomycin, a biocide secreted by Saccharomyces cerevisiae

    Branco, P., Francisco, D., Monteiro, M., Almeida, M. G., Caldeira, J., Arneborg, Nils, Prista, C. & Albergaria, H., 2017, In: Applied Microbiology and Biotechnology. 101, 1, p. 159-171 13 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  90. Published

    Biofilm Formation Potential of Heat-Resistant Escherichia coli Dairy Isolates and Complete Genome of Multidrug-Resistant, Heat-Resistant Strain FAM21845

    Marti, R., Schmid, M., Kulli, S., Schneeberger, K., Naskova, J., Knoechel, Susanne, Ahrens, C. H. & Hummerjohann, J., 2017, In: Applied and Environmental Microbiology. 83, 15, p. 1-20 20 p., e00628-17 .

    Research output: Contribution to journal › Journal article › Research › peer-review

  91. Published

    Changes in phytate content in whole meal wheat dough and bread fermented with phytase-active yeasts

    Mohd Noor, N. Q. I. B., Nuobariene, L., Rasmussen, S. K., Arneborg, Nils & Hansen, Åse Solvej, 2017, In: Cereal Chemistry. 94, 6, p. 922-927 6 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  92. Published

    Critical review on biofilm methods

    Azeredo, J., Azevedo, N. F., Briandet, R., Cerca, N., Coenye, T., Costa, A. R., Desvaux, M., Di Bonaventura, G., Hébraud, M., Jaglic, Z., Kačániová, M., Knoechel, Susanne, Lourenço, A., Mergulhão, F., Meyer, R. L., Nychas, G., Simões, M., Tresse, O. & Sternberg, C., 2017, In: Critical Reviews in Microbiology. 43, 3, p. 313-351 39 p.

    Research output: Contribution to journal › Review › Research › peer-review

  93. Published

    Deciphering the association networks of mycobiome communities among the elderly Danes

    Bin Ahmad, H. F., Faust, K., Castro Mejia, J. L., Kot, W., Bechshøft, R., Reitelseder, S., Holm, L. & Nielsen, Dennis Sandris, 2017. 1 p.

    Research output: Contribution to conference › Poster › Research

  94. Published

    Development and application of a low volume, increased throughput in vitro model simulating the passage through small intestine

    Cieplak, T. M., 2017, Department of Food Science, Faculty of Science, University of Copenhagen. 176 p.

    Research output: Book/Report › Ph.D. thesis › Research

  95. Published

    Dietary cinnamaldehyde enhances acquisition of specific antibodies following helminth infection in pigs

    Williams, Andrew Richard, Hansen, Tina Vicky Alstrup, Krych, Lukasz, Bin Ahmad, H. F., Nielsen, Dennis Sandris, Skovgaard, K. & Thamsborg, Stig Milan, 2017, In: Veterinary Immunology and Immunopathology. 189, p. 43-52 10 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  96. Published

    Effect of early-life gut mucosal compromise on disease progression in NOD mice

    Bendtsen, K. M., Hansen, Camilla Hartmann Friis, Krych, Lukasz, Buschard, K., Farlov, H. & Hansen, Axel Kornerup, 2017, In: Comparative Medicine. 67, 5, p. 388-399 12 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  97. Published

    Effect of sequential fermentations and grape cultivars on volatile compounds and sensory profiles of Danish wines

    Liu, J., Arneborg, Nils, Toldam-Andersen, Torben, Petersen, Mikael Agerlin & Bredie, Wender, 2017, In: Journal of the Science of Food and Agriculture. 97, 11, p. 3594-3602 9 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  98. Published

    Genomic Characterization of Dairy Associated Leuconostoc Species and Diversity of Leuconostocs in Undefined Mixed Mesophilic Starter Cultures

    Frantzen, C. A., Kot, W., Pedersen, T. B., Ardö, Ylva Margareta, Broadbent, J. R., Neve, H., Hansen, L. H., Dal Bello, F., Ostlie, H. M., Kleppen, H. P., Vogensen, Finn Kvist & Holo, H., 2017, In: Frontiers in Microbiology. 8, 14 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  99. Published

    Gut microbiota composition may relate to weight loss rate in obese pet dogs

    Kieler, Ida Nordang, Bin Shamzir Kamal, S., Vitger, Anne Désiré, Nielsen, Dennis Sandris, Lauridsen, C. & Bjørnvad, Charlotte Reinhard, 2017, In: Veterinary Medicine and Science. 3, 4, p. 252-262 11 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  100. Published

    Heterogeneity between and within Strains of Lactobacillus brevis Exposed to Beer Compounds

    Zhao, Y., Knoechel, Susanne & Siegumfeldt, Henrik, 2017, In: Frontiers in Microbiology. 8, 13 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  101. Published

    High-Quality Draft Genome Sequence of Lactobacillus casei Strain Z11, Isolated from a Human Adult Intestinal Biopsy Sample

    Coba, M. S. M., Marshall, I. P. G., Schreiber, L. & Nielsen, Dennis Sandris, 2017, In: Genome Announcements. 5, 28, 2 p., e00634-17.

    Research output: Contribution to journal › Journal article › Research › peer-review

  102. Published

    Identification of weak and gender specific effects in a short 3 weeks intervention study using barley and oat mixed linkage β-glucan dietary supplements: a human fecal metabolome study by GC-MS

    Trimigno, A., Khakimov, Bekzod, Castro Mejia, J. L., Mikkelsen, M. S., Kristensen, M. B., Jespersen, Birthe P Møller & Engelsen, Søren Balling, 2017, In: Metabolomics. 13, 13 p., 108.

    Research output: Contribution to journal › Journal article › Research › peer-review

  103. Published

    Immunological effects of reduced mucosal integrity in the early life of BALB/c mice

    Bendtsen, K. M. B., Hansen, Camilla Hartmann Friis, Krych, Lukasz, Skovgaard, K., Kot, W. P., Vogensen, Finn Kvist & Hansen, Axel Kornerup, 2017, In: PLOS ONE. 12, 5, 20 p., 0176662.

    Research output: Contribution to journal › Journal article › Research › peer-review

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