Food Microbiology, Gut Health, and Fermentation

  1. 2023
  2. Published

    Complete and Draft Genome Sequences of 52 Bacillus and Priestia Strains Isolated from West African Fermentations and 26 Reference Strains from a Public Culture Collection

    Wiedenbein, Emma Schack, Canoy, Tessa Suzanne, Hui, Y., Parkouda, C., Compaoré, C. S., Ametefe, E., Jakobsen, M., Jespersen, Lene, Nielsen, Dennis Sandris & Roux, S. (ed.), 2023, In: Microbiology resource announcements. 12, 7, 5 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  3. Published

    Diet-associated vertically transferred metabolites and risk of asthma, allergy, eczema, and infections in early childhood

    Brustad, N., Olarini, A., Kim, M., Chen, L., Ali, M., Wang, T., Cohen, A. S., Ernst, M., Hougaard, D., Schoos, Ann-Marie Malby, Stokholm, Jakob, Bønnelykke, Klaus, Lasky-Su, J., Rasmussen, Morten Arendt & Chawes, Bo Lund Krogsgaard, 2023, In: Pediatric Allergy and Immunology. 34, 2, 8 p., e13917.

    Research output: Contribution to journalJournal articleResearchpeer-review

  4. Published

    Dietary non-starch polysaccharides impair immunity to enteric nematode infection

    Valente, Angela Hørdum, Jensen, K. M. R., Myhill, Laura Jessica, Zhu, L., Mentzel, Caroline M. Junker, Krych, Lukasz, Simonsen, H. T., Castro-Mejía, J. L., Gobbi, Alex, Bach Knudsen, K. E., Nielsen, Dennis Sandris, Thamsborg, Stig Milan & Williams, Andrew Richard, 2023, In: BMC Biology. 21, 16 p., 138.

    Research output: Contribution to journalJournal articleResearchpeer-review

  5. Published
  6. Published

    Differential responses of the gut microbiome and resistome to antibiotic exposures in infants and adults

    Li, Xuan Ji, Brejnrod, A., Thorsen, J., Zachariasen, Trine, Trivedi, Urvish, Russel, J., Vestergaard, G. A., Stokholm, Jakob, Rasmussen, Morten Arendt & Sørensen, Søren Johannes, 2023, In: Nature Communications. 14, 1, 16 p., 8526.

    Research output: Contribution to journalJournal articleResearchpeer-review

  7. Published

    Diversity and succession of contaminating yeasts in white-brined cheese during cold storage

    Geronikou, Athina, Larsen, Nadja, Lillevang, S. K. & Jespersen, Lene, 2023, In: Food Microbiology. 113, 10 p., 104266.

    Research output: Contribution to journalJournal articleResearchpeer-review

  8. Published

    Draft genomes of seven isolates from Danish wastewater facilities belonging to Pseudomonas, Bacillus, Pseudochrobactrum, Brevundimonas, and Pandoraea

    Maccario, Lorrie, Silva, A. F., Nesme, Joseph, Amador Hierro, Cristina Isabel, Sørensen, Søren Johannes, Cooper, V. S. & Røder, Henriette Lyng, 2023, In: Microbiology resource announcements. 12, 12, 4 p.

    Research output: Contribution to journalLetterResearchpeer-review

  9. Published

    Effect of Cyberlindnera jadinii yeast on growth performance, nutrient digestibility, and gut health of broiler chickens from 1 to 34 days of age

    Itani, K., Marcussen, Caroline, Rocha, S. D. C., Kathiresan, P., Mydland, L. T., Press, C. M., Xie, Zhuqing, Tauson, Anne-Helene & Øverland, M., 2023, In: Poultry Science. 102, 12, 16 p., 103127.

    Research output: Contribution to journalJournal articleResearchpeer-review

  10. Published

    Effect of fermentation process on hygiene and perceived quality of lait caillé, an ethnic milk product from Burkina Faso

    Bayili, G. R., Konkobo-Yaméogo, C., Diarra, S., Diawara, B., Jespersen, Lene & Sawadogo-Lingani, H., 2023, In: Journal of Ethnic Foods. 10, 13 p., 17.

    Research output: Contribution to journalJournal articleResearchpeer-review

  11. Published

    Effect of processing on in vitro digestibility (IVPD) of food proteins

    Orlien, Vibeke, Aalaei, K., Poojary, Mahesha Manjunatha, Nielsen, Dennis Sandris, Ahrné, Lilia & Ruiz Carrascal, Jorge, 2023, In: Critical Reviews in Food Science and Nutrition. 63, 16, p. 2790-2839

    Research output: Contribution to journalReviewResearchpeer-review

  12. Published

    Environment or genetic isolation? An atypical intestinal microbiota in the Maltese honey bee Apis mellifera spp. ruttneri

    Gaggìa, F., Jakobsen, Rasmus Riemer, Alberoni, D., Baffoni, L., Cutajar, S., Mifsud, D., Nielsen, Dennis Sandris & Di Gioia, D., 2023, In: Frontiers in Microbiology. 14, 15 p., 1127717.

    Research output: Contribution to journalJournal articleResearchpeer-review

  13. Published

    Evidence-based health interventions for the educational sector: Application and lessons learned from developing European food hygiene and safety teaching resources

    Hann, M., Hayes, C. V., Lacroix-Hugues, V., Touboul Lundgren, P., McNulty, C., Syeda, R., Eley, C., Teixeira, P., Gennimata, D., Truninger, M., Knoechel, Susanne, Münter, L., Allison, R., Fehér, Á., Izsó, T., Kunszabó, A., Kasza, G. & Demirjian, A., 2023, In: Food Control. 143, 9 p., 109219.

    Research output: Contribution to journalJournal articleResearchpeer-review

  14. Published

    Exhaled nitric oxide is only an asthma-relevant biomarker among children with allergic sensitization

    Sunde, R. B., Thorsen, J., Skov, F., Hesselberg, L., Kyvsgaard, J., Følsgaard, N. V., Schoos, Ann-Marie Malby, Stokholm, Jakob, Bønnelykke, Klaus & Chawes, Bo Lund Krogsgaard, 2023, In: Pediatric Allergy and Immunology. 34, 11, 12 p., e14044.

    Research output: Contribution to journalJournal articleResearchpeer-review

  15. Published

    Expanding known viral diversity in the healthy infant gut

    Shah, S. A., Deng, L., Thorsen, J., Pedersen, A. G., Dion, M. B., Castro-Mejía, J. L., Silins, R., Romme, F. O., Sausset, R., Jessen, L. E., Ndela, E. O., Hjelmsø, M., Rasmussen, M. A., Redgwell, T. A., Rodríguez, C. L., Vestergaard, G., Zhang, Y., Chawes, B., Bønnelykke, K., Sørensen, S. J. & 6 others, Bisgaard, H., Enault, F., Stokholm, Jakob, Moineau, S., Petit, M. A. & Nielsen, Dennis Sandris, 2023, In: Nature Microbiology. 8, p. 986–998

    Research output: Contribution to journalJournal articleResearchpeer-review

  16. Published

    Familiarity and identification of everyday food odors in older adults and their influence on hedonic liking

    Broge, Eva Honnens de Lichtenberg, Wendin, Karin Maria Elisabet, Rasmussen, Morten Arendt & Bredie, Wender, 2023, In: Food Quality and Preference. 103, 10 p., 104715.

    Research output: Contribution to journalJournal articleResearchpeer-review

  17. Published
  18. Published

    Fungi and bacteria in the beds of rural and urban infants correlate with later risk of atopic diseases

    Lehtimäki, J., Gupta, S., Hjelmsø, M., Shah, S., Thorsen, Jonathan Jan Ilve, Rasmussen, Morten Arendt, Soverini, M., Li, Xuan Ji, Russel, J., Trivedi, Urvish, Brix, S., Bønnelykke, Klaus, Chawes, Bo Lund Krogsgaard, Bisgaard, H., Sørensen, Søren Johannes & Stokholm, Jakob, 2023, In: Clinical and Experimental Allergy. 53, 12, p. 1268-1278 11 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  19. Published

    Genotypic variations and interspecific interactions modify gene expression and biofilm formation of Xanthomonas retroflexus

    Jacquiod, S., Olsen, N. M. C., Blouin, M., Røder, Henriette Lyng & Burmølle, Mette, 2023, In: Environmental Microbiology. 25, 12, 3225-3238.

    Research output: Contribution to journalJournal articleResearchpeer-review

  20. Published

    Gut microbiota maturity mediates the protective effect of siblings on food allergy

    Gao, Y., Stokholm, Jakob, O'Hely, M., Ponsonby, A. L., Tang, M. L. K., Ranganathan, S., Saffery, R., Harrison, L. C., Collier, F., Gray, L., Burgner, D., Molloy, J., Sly, P. D., Brix, S., Frøkiær, Hanne, Vuillermin, P. & BIS Investigator Group, B. I. G., 2023, In: Journal of Allergy and Clinical Immunology. 152, 3, p. 667-675 9 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  21. Published

    Handgrip strength associates with effort-dependent lung function measures among adolescents with and without asthma

    Hesselberg, L. M., Kyvsgaard, J. N., Stokholm, Jakob, Bisgaard, H., Bønnelykke, Klaus & Chawes, Bo Lund Krogsgaard, 2023, In: Scientific Reports. 13, 9 p., 13044.

    Research output: Contribution to journalJournal articleResearchpeer-review

  22. Published

    High-throughput Amplicon Sequencing of Gut Microbiome Sea Cucumber in Pahang, Malaysia

    Choo, M. Y., Yusof, M. F., Kamal, S. S., Nielsen, Dennis Sandris & Ahmad, H. F., 2023, 3rd Symposium on Industrial Science and Technology, SISTEC 2021. Salim, N., Samah, N. A., Nazlan, R., Widia, M. & Sukadarin, E. H. (eds.). American Institute of Physics, 050009. (AIP Conference Proceedings, Vol. 2682).

    Research output: Chapter in Book/Report/Conference proceedingArticle in proceedingsResearchpeer-review

  23. Published

    Human blood plasma biomarkers of diet and weight loss among centrally obese subjects in a New Nordic Diet intervention

    Trimigno, A., Khakimov, Bekzod, Rasmussen, Morten Arendt, Dragsted, Lars Ove, Larsen, T. M., Astrup, A. & Engelsen, Søren Balling, 2023, In: Frontiers in Nutrition. 10, 13 p., 1198531.

    Research output: Contribution to journalJournal articleResearchpeer-review

  24. Published

    IDDF2023-ABS-0301 Pathogenic fungi of rhodotorula dairenensis is linked with colorectal cancer patients in malaysia

    Yunus, A., Mokhtar, N. M., Raja Ali, R. A., Kendong, S. M. A., Nielsen, Dennis Sandris & Ahmad, H. F., 2023, In: Gut. 72, p. A132 1 p.

    Research output: Contribution to journalConference abstract in journalResearchpeer-review

  25. Published

    Lactic acid bacteria as structural building blocks in non-fat whipping cream analogues

    Jiang, X., Shekarforoush, E., Muhammed, Musemma Kedir, Whitehead, K. A., Arneborg, Nils & Risbo, Jens, 2023, In: Food Hydrocolloids. 135, 13 p., 108137.

    Research output: Contribution to journalJournal articleResearchpeer-review

  26. Published

    Limited clinical role of blood eosinophil levels in early life atopic disease: A mother–child cohort study

    Jensen, S. K., Melgaard, M. E., Pedersen, C. E. T., Yang, L., Vahman, N., Thyssen, Jacob Pontoppidan, Schoos, Ann-Marie Malby, Stokholm, Jakob, Bisgaard, H., Chawes, Bo Lund Krogsgaard & Bønnelykke, Klaus, 2023, In: Pediatric Allergy and Immunology. 34, 11, 10 p., e14050.

    Research output: Contribution to journalJournal articleResearchpeer-review

  27. Published

    Machine-learning analysis of cross-study samples according to the gut microbiome in 12 infant cohorts

    Vänni, P., Tejesvi, M. V., Paalanne, N., Aagaard, K., Ackermann, G., Camargo, C. A., Eggesbø, M., Hasegawa, K., Hoen, A. G., Karagas, M. R., Kolho, K., Laursen, M. F., Ludvigsson, J., Madan, J., Ownby, D., Stanton, C., Stokholm, Jakob & Tapiainen, T., 2023, In: mSystems. 8, 6, 20 p., e0036423.

    Research output: Contribution to journalJournal articleResearchpeer-review

  28. Published

    Maternal antibiotic exposure increases total islet number and volume in the neonatal pancreas and reduces HbA1c and insulitis in adult female non-obese diabetic mice

    Hansen, Camilla Hartmann Friis, Haupt-Jorgensen, M., Buschard, K., Pakkenberg, B., Krych, Lukasz & Hansen, Axel Kornerup, 2023, In: Clinical and Translational Discovery. 3, 2, 13 p., e188.

    Research output: Contribution to journalJournal articleResearchpeer-review

  29. Published

    Maternal vitamin D–related metabolome and offspring risk of asthma outcomes

    Kim, M., Brustad, N., Ali, M., Gürdeniz, G., Rasmussen, Morten Arendt, Litonjua, A. A., Wheelock, C. E., Kelly, R. S., Chen, Y., Prince, N., Guo, F., Zhou, X., Stokholm, Jakob, Bønnelykke, Klaus, Weiss, S. T., Bisgaard, H., Lasky-Su, J. & Chawes, Bo Lund Krogsgaard, 2023, In: Journal of Allergy and Clinical Immunology. 152, 6, p. 1646-1657.e11 23 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  30. Published

    Matrix Gla Protein drives stemness and tumor initiation in ovarian cancer

    Nieddu, V., Melocchi, V., Battistini, C., Franciosa, Giulia, Lupia, M., Stellato, C., Bertalot, G., Olsen, Jesper Velgaard, Colombo, N., Bianchi, F. & Cavallaro, U., 2023, In: Cell Death and Disease. 14, 3, 16 p., 220.

    Research output: Contribution to journalJournal articleResearchpeer-review

  31. Published

    Microalgae-derived carbon quantum dots mediated formation of metal sulfide nano-adsorbents with exceptional cadmium removal performance

    Wang, Chen, Bi, L., Liu, J., Huang, B., Wang, F., Zhang, Yichang, Yao, C., Pan, G. & Song, M., 2023, In: Journal of Colloid and Interface Science. 629, Part A, p. 994-1002 9 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  32. Published

    Not simply a matter of parents—Infants’ sleep-wake patterns are associated with their regularity of eating

    Mühlematter, C., Nielsen, Dennis Sandris, Castro-Mejía, J. L., Brown, S. A., Rasch, B., Wright, K. P., Walser, J. C., Schoch, S. F. & Kurth, S., 2023, In: PLoS ONE. 18, 10 , 15 p., e0291441.

    Research output: Contribution to journalJournal articleResearchpeer-review

  33. Published

    Novel Connections of Common Childhood Illnesses Based on More Than 5 Million Diary Registrations From Birth Till Age 3 Years

    Nørgaard, S. K., Følsgaard, N., Vissing, N. H., Kyvsgaard, J. N., Chawes, Bo Lund Krogsgaard, Stokholm, Jakob, Smilde, Age Klaas, Bønnelykke, Klaus, Bisgaard, H. & Rasmussen, Morten Arendt, 2023, In: Journal of Allergy and Clinical Immunology: In Practice. 11, 7, p. 2162-2171.e6 16 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  34. Published

    Oligosaccharide feed supplementation reduces plasma insulin in geldings with Equine Metabolic Syndrome

    von Münchow, Alexandra, Torp Yttergren, S., Jakobsen, Rasmus Riemer, Luthersson, N., Hansen, Axel Kornerup & Lindenberg, F., 2023, In: Frontiers in Microbiomes. 2, p. 1194705 15 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  35. Published

    Oropharyngeal Microbiota Clusters in Children with Asthma or Wheeze Associate with Allergy, Blood Transcriptomic Immune Pathways, and Exacerbation Risk

    U-BIOPRED Study Group, U. S. G., 2023, In: American Journal of Respiratory and Critical Care Medicine. 208, 2, p. 142-154 13 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  36. Published

    Post-weaning diarrhea in pigs from a single Danish production herd was not associated with the pre-weaning fecal microbiota composition and diversity

    Rydal, Martin Peter, Gambino, Michela, Castro-Mejia, J. L., Poulsen, Louise Ladefoged, Jørgensen, Claus Bøttcher & Nielsen, Jens Peter, 2023, In: Frontiers in Microbiology. 14, 1108197.

    Research output: Contribution to journalJournal articleResearchpeer-review

  37. Published

    Preliminary Screening of Bacterial and Fungal Communities from Spontaneous Fermentation of Durian Pulps (Tempoyak) Using High-throughput Amplicon Sequencing

    Musa, S. M., Kamal, S. S., Nielsen, Dennis Sandris & Ahmad, H. F., 2023, 3rd Symposium on Industrial Science and Technology, SISTEC 2021. Salim, N., Samah, N. A., Nazlan, R., Widia, M. & Sukadarin, E. H. (eds.). American Institute of Physics, 050010. (AIP Conference Proceedings, Vol. 2682).

    Research output: Chapter in Book/Report/Conference proceedingArticle in proceedingsResearchpeer-review

  38. Published

    Probing surface properties of lactic acid bacteria - Comparative modification by anhydride and aldehyde grafting

    Jiang, X., Shekarforoush, E., Muhammed, Musemma Kedir, Bovet, N., Ceccato, M., Whitehead, K. A., Arneborg, Nils & Risbo, Jens, 2023, In: Surfaces and Interfaces. 38, 12 p., 102848.

    Research output: Contribution to journalJournal articleResearchpeer-review

  39. Published

    Propionylated high-amylose maize starch alleviates obesity by modulating gut microbiota in high-fat diet-fed mice

    Xie, Zhuqing, Yao, M., Castro-Mejía, J. L., Ma, M., Zhu, Y., Fu, X., Huang, Q. & Zhang, B., 2023, In: Journal of Functional Foods. 102, 10 p., 105447.

    Research output: Contribution to journalJournal articleResearchpeer-review

  40. Published

    Pulmonary toxicity and translocation of gallium phosphide nanowires to secondary organs following pulmonary exposure in mice

    Berthing, T., Lard, M., Danielsen, P. H., Abariute, L., Barfod, Kenneth Klingenberg, Adolfsson, K., Knudsen, K. B., Wolff, H., Prinz, C. N. & Vogel, U., 2023, In: Journal of Nanobiotechnology. 21, 18 p., 322.

    Research output: Contribution to journalJournal articleResearchpeer-review

  41. Published

    Reduced phosphatidylcholine level in the intestinal mucus layer of prediabetic NOD mice

    Mønsted, M. Ø., Bilgin, M., Kuzma, M., Pelantová, H., Pedersen, K., Tomášová, P., Nazmutdinova, A., Šedivá, B., Funda, D., Castro-Mejía, J. L., Holm, L. J., Nielsen, Dennis Sandris & Haupt-Jorgensen, M., 2023, In: APMIS - Journal of Pathology, Microbiology and Immunology. 131, 6, p. 237-248

    Research output: Contribution to journalJournal articleResearchpeer-review

  42. Published

    Replication Protein Rep Provides Selective Advantage to Viruses in the Presence of CRISPR-Cas Immunity

    Zhang, W., Bhoobalan-Chitty, Y., Zhai, Xichuan, Hui, Y., Hansen, Lars Hestbjerg, Deng, Ling & Peng, Xu, 2023, In: CRISPR Journal. 6, 1, p. 32-42

    Research output: Contribution to journalJournal articleResearchpeer-review

  43. Published

    Risk Factors and Age-Related Patterns of Asthma-Like Symptoms in Early Childhood

    Kyvsgaard, J. N., Chawes, Bo Lund Krogsgaard, Horner, David Lyle George, Hesselberg, L. M., Melgaard, M. E., Jensen, S. K., Schoos, Ann-Marie Malby, Thorsen, Jonathan Jan Ilve, Pedersen, C. E. T., Brustad, N., Bønnelykke, Klaus, Bisgaard, H. & Stokholm, Jakob, 2023, In: Journal of Allergy and Clinical Immunology: In Practice. 11, 6, p. 1773-1784.e10 22 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  44. Published

    Seasonal and Elevational Variability in Dwarf Birch VOC Emissions in Greenlandic Tundra

    Rieksta, Jolanta, Li, Tao, Davie-Martin, Cleo Lisa, Simin, Tihomir, Brogaard Aeppli, L. C., Høye, T. T., Rasmussen, Morten Arendt & Rinnan, Riikka, 2023, In: Journal of Geophysical Research: Biogeosciences. 128, 11, 17 p., e2023JG007475.

    Research output: Contribution to journalJournal articleResearchpeer-review

  45. Published

    Soluble, Diferuloylated Corn Bran Glucuronoarabinoxylans Modulate the Human Gut Microbiota In Vitro

    Lin, S., Xu, X., Holck, J., Agger, J. W., Wilkens, C., Xie, Zhuqing, Khakimov, Bekzod, Nielsen, Dennis Sandris & Meyer, A. S., 2023, In: Journal of Agricultural and Food Chemistry. 71, 8, p. 3885-3897

    Research output: Contribution to journalJournal articleResearchpeer-review

  46. Published

    Supplementation With Fish Oil in Pregnancy Reduces Gastroenteritis in Early Childhood

    Horner, David Lyle George, Hjelmsø, M. H., Thorsen, J., Rasmussen, Morten Arendt, Eliasen, A., Vinding, R. K., Schoos, Ann-Marie Malby, Brustad, N., Sunde, R. B., Bønnelykke, Klaus, Chawes, Bo Lund Krogsgaard, Stokholm, Jakob & Bisgaard, H., 2023, In: Journal of Infectious Diseases. 227, 3, p. 448–456 9 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  47. Published
  48. Published

    The airway microbiota of neonates colonized with asthma-associated pathogenic bacteria

    Thorsen, Jonathan Jan Ilve, Li, Xuan Ji, Peng, Shuang, Sunde, R. B., Shah, S. A., Bhattacharyya, M., Poulsen, C. S., Poulsen, Christina Egeø, Leal Rodriguez, C., Widdowson, Michael Lawrence, Neumann, A. U., Trivedi, Urvish, Chawes, Bo Lund Krogsgaard, Bønnelykke, Klaus, Bisgaard, H., Sørensen, Søren Johannes & Stokholm, Jakob, 2023, In: Nature Communications. 14, 12 p., 6668.

    Research output: Contribution to journalJournal articleResearchpeer-review

  49. Published

    The impact of bacterial exposure in early life on lung surfactant gene expression, function and respiratory rate in germ-free mice

    Barfod, Kenneth Klingenberg, Lui, J. C., Hansen, Signe Schmidt Kjølner, Sengupta, S., Zachariassen, L. S. F., Hansen, Axel Kornerup & Sørli, J. B., 2023, In: Frontiers in Microbiomes. 2, 12 p., 1085508.

    Research output: Contribution to journalJournal articleResearchpeer-review

  50. Published

    The impact of storage buffer and storage conditions on fecal samples for bacteriophage infectivity and metavirome analyses

    Zhai, Xichuan, Castro-Mejía, J. L., Gobbi, Alex, Aslampaloglou, A., Kot, Witold, Nielsen, Dennis Sandris & Deng, Ling, 2023, In: Microbiome. 11, 12 p., 193.

    Research output: Contribution to journalJournal articleResearchpeer-review

  51. Published

    The infant gut virome is associated with preschool asthma risk independently of bacteria

    Rodríguez, C. L., Shah, S. A., Rasmussen, Morten Arendt, Thorsen, J., Boulund, U., Pedersen, C. T., Castro-Mejía, J. L., Poulsen, Christina Egeø, Poulsen, C. S., Deng, Ling, Larsen, Frej Andreas Nøhr, Widdowson, Michael Lawrence, Zhang, Yichang, Sørensen, Søren Johannes, Moineau, S., Petit, M. A., Chawes, Bo Lund Krogsgaard, Bønnelykke, Klaus, Nielsen, Dennis Sandris & Stokholm, Jakob, 2023, In: Nature Medicine. 30, p. 138-148 11 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

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