Food Microbiology, Gut Health, and Fermentation

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  1. Published

    High-dose vitamin D3 supplementation in pregnancy and risk of neurodevelopmental disorders in the children at age 10: A randomized clinical trial

    Aagaard, K., Jepsen, J. R. M., Sevelsted, A., Horner, D., Vinding, R., Rosenberg, J. B., Brustad, N., Eliasen, A., Mohammadzadeh, P., Følsgaard, N., Hernández-lorca, M., Fagerlund, Birgitte, Glenthøj, Birte Yding, Rasmussen, Morten Arendt, Bilenberg, N., Stokholm, Jakob, Bønnelykke, Klaus, Ebdrup, Bjørn & Chawes, Bo Lund Krogsgaard, 2024, In: The American Journal of Clinical Nutrition. 119, 2, p. 362-370 9 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  2. Published

    A Gently Processed Skim Milk-Derived Whey Protein Concentrate for Infant Formula: Effects on Gut Development and Immunity in Preterm Pigs

    Aasmul-Olsen, Karoline, Akıllıoğlu, H. G., Christiansen, Line Iadsatian, Engholm-Keller, Kasper, Brunse, Anders, Stefanova, Denitsa Vladimirova, Bjørnshave, A., Bechshøft, M. R., Skovgaard, K., Thymann, Thomas, Sangild, Per Torp, Lund, Marianne N. & Bering, S. B., 2024, In: Molecular Nutrition and Food Research. 68, 6, 2300458.

    Research output: Contribution to journal › Journal article › Research › peer-review

  3. Published

    Screening for Bacillus subtilis group isolates that degrade cyanogens at pH 4.5-5.0.

    Abban, S., Brimer, L., Abdelgadir, W. S., Jakobsen, M. & Thorsen, L., 2013, In: International Journal of Food Microbiology. 161, 1, p. 31-35 5 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  4. Published

    A practical evaluation of detergent and disinfectant solutions on cargo container surfaces for bacteria inactivation efficacy and effect on material corrosion

    Abban, S., Jakobsen, M. & Jespersen, Lene, 2013, In: African Journal of Biotechnology. 12, 23, p. 3689-3698 10 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  5. Published

    Assessment of interplay between UV wavelengths, material surfaces and food residues in open surface hygiene validation

    Abban, S., Jakobsen, M. & Jespersen, Lene, 2014, In: Journal of Food Science and Technology. 51, 12, p. 3977-3983 7 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  6. Published

    Microbial behaviour and cross contamination between cargoes in containerized transportation of food

    Abban, S., 2013, Department of Food Science, University of Copenhagen. 183 p.

    Research output: Book/Report › Ph.D. thesis › Research

  7. Published

    Oropharyngeal Microbiota Clusters in Children with Asthma or Wheeze Associate with Allergy, Blood Transcriptomic Immune Pathways, and Exacerbation Risk

    U-BIOPRED Study Group, U. S. G., 2023, In: American Journal of Respiratory and Critical Care Medicine. 208, 2, p. 142-154 13 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  8. Published

    Lactobacillus delbrueckii subsp. jakobsenii subsp. nov., isolated from dolo wort, an alcoholic fermented beverage in Burkina Faso

    Adimpong, D. B., Nielsen, Dennis Sandris, Sørensen, K. I., Vogensen, Finn Kvist, Sawadogo-Lingani, H., Derkx, P. M. F. & Jespersen, Lene, 2013, In: International Journal of Systematic and Evolutionary Microbiology. 63, 11, p. 3720-3726 7 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  9. Published

    Draft whole-genome sequence of Bacillus sonorensis strain L12, a source of nonribosomal lipopeptides

    Adimpong, D. B., Sørensen, K. I., Nielsen, Dennis Sandris, Thorsen, L., Rasmussen, T. B., Derkx, P. M. F. & Jespersen, Lene, 2013, In: Genome Announcements. 1, 2, 2 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  10. Published

    Geno- and phenotypic characterization of lactic acid bacteria and Bacillus spp. strains isolated from African indigenous fermented food products and their applications in the food and feed industries

    Adimpong, D. B., 2013, Department of Food Science, University of Copenhagen. 137 p.

    Research output: Book/Report › Ph.D. thesis › Research

  11. Published

    Biodiversity of aerobic endospore-forming bacterial species occurring in Yanyanku and Ikpiru, fermented seeds of Hibiscus sabdariffa used to produce food condiments in Benin

    Agbobatinkpo, P. B., Thorsen, L., Nielsen, Dennis Sandris, Azokpota, P., Akissoe, N., Hounhouigan, J. D. & Jakobsen, M., 2013, In: International Journal of Food Microbiology. 163, 2-3, p. 231-238 8 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  12. Published

    Impaired skeletal muscle hypertrophy signaling and amino acid deprivation response in Apoe knockout mice with an unhealthy lipoprotein distribution

    Agergaard, J., Zillmer, M. C. F., Castro-Mejía, J. L., Mertz, K., Kot, Witold, Højfeldt, Grith Stougaard, van Hall, Gerrit, Nielsen, Dennis Sandris, Schjerling, Peter & Holm, Lars Morten, 2021, In: Scientific Reports. 11, 15 p., 16423.

    Research output: Contribution to journal › Journal article › Research › peer-review

  13. Published

    Draft Genome Sequence of Streptococcus anginosus Strain CALM001, Isolated from the Gut of an Elderly Dane

    Ahmad, H. F., Schreiber, L., Marshall, I. P. G., Andersen, P. J., Castro Mejia, J. L. & Nielsen, Dennis Sandris, 2019, In: Microbiology resource announcements. 8, 24, 2 p., e00379-19.

    Research output: Contribution to journal › Journal article › Research › peer-review

  14. Published

    IDDF2020-ABS-0174 Onset of hypertriglyceridemia in relation to dietary intake, gut microbiome and metabolomics signatures among home dwelling elderly

    Ahmad, H. F., Mejia, J. L. C., Krych, Lukasz, Khakimov, Bekzod, Kot, W., Bechshoft, R. L., Reitelseder, S., Engelsen, Søren Balling, Holm, L. & Faust, K., 2020, In: Gut. 69, Suppl 2, p. A21-A21 1 p.

    Research output: Contribution to journal › Conference abstract in journal › Research › peer-review

  15. Published

    Nutrient Restriction has Limited Short-Term Effects on Gut, Immunity, and Brain Development in Preterm Pigs

    Ahnfeldt, Agnethe May, Bæk, Ole, Hui, Y., Nielsen, Charlotte Holme, Obelitz-Ryom, K., Busk-Anderson, T., Ruge, A., Holst, Jens Juul, Rudloff, S., Burrin, D., Nguyen, Duc Ninh, Nielsen, Dennis Sandris, Zachariassen, G., Bering, S. B., Thymann, Thomas & Sangild, Per Torp, 2020, In: The Journal of Nutrition. 150, 5, p. 1196-1207

    Research output: Contribution to journal › Journal article › Research › peer-review

  16. Published

    Taxonomic and molecular characterization of lactic acid bacteria and yeasts in nunu, a Ghanaian fermented milk product

    Akabanda, F., Owusu-Kwarteng, J., Tano-Debrah, K., Glover, R. L. K., Nielsen, Dennis Sandris & Jespersen, Lene, 2013, In: Food Microbiology. 34, 2, p. 277-283 7 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  17. Published

    The use of lactic acid bacteria starter culture in the production of Nunu, a spontaneously fermented milk product in Ghana

    Akabanda, F., Owusu-Kwarteng, J., Tano-Debrah, K., Parkouda, C. & Jespersen, Lene, 2014, In: International Journal of Food Science. 2014, 12 p., 721067.

    Research output: Contribution to journal › Journal article › Research › peer-review

  18. Published

    Interaction between sodium chloride and texture in semi-hard Danish cheese as affected by brining time, DL-starter culture, chymosin type and cheese ripening

    Akkerman, M., Søndergaard, L., Jespersen, Lene, Ryssel, M., Mackie, A., Larsen, N. N., Andersen, U., Nørgaard, M. K., Løkke, M. M., Møller, J. R., Mielby, L. A., Andersen, B. V., Kidmose, U. & Hammershøj, M., 2017, In: International Dairy Journal. 70, p. 34-45 12 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  19. Published

    Dominance of Saccharomyces cerevisiae in alcoholic fermentation processes: role of physiological fitness and microbial interactions

    Albergaria, H. & Arneborg, Nils, 2016, In: Applied Microbiology and Biotechnology. 100, 5, p. 2035-2046 12 p.

    Research output: Contribution to journal › Review › Research › peer-review

  20. Published

    Supplementation with inulin-type fructans affects gut microbiota and attenuates some of the cardiometabolic benefits of a plant-based diet in individuals with overweight or obesity

    Aldubayan, Mona Adnan Y, Mao, Xiaotian, Laursen, M. F., Pigsborg, Kristina, Christensen, Lars, Roager, Henrik Munch, Nielsen, Dennis Sandris, Hjorth, Mads Fiil & Magkos, Faidon, 2023, In: Frontiers in Nutrition. 10, 13 p., 1108088.

    Research output: Contribution to journal › Journal article › Research › peer-review

  21. Published

    Rheological and sensory properties and aroma compounds formed during ripening of soft brined cheese made from camel milk

    Alemu, Y. H., Hansen, E. B., Seifu, E., Petersen, Mikael Agerlin, Lametsch, Rene, Rattray, F. P. & Ipsen, Richard, 2018, In: International Dairy Journal. 81, p. 122-130 9 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  22. Published

    The power and potential of BIOMAP to elucidate host-microbiome interplay in skin inflammatory diseases

    Alenius, H., Sinkko, H., Moitinho-Silva, L., Rodriguez, E., Broderick, C., Alexander, H., Reiger, M., Hjelmsø, M. H., Fyhrquist, N., Olah, P., Bryce, P., Smith, C., Koning, F., Eyerich, K., Greco, D., van den Bogaard, E. H., Neumann, A. U., Traidl-Hoffmann, C., Homey, B., Flohr, C. & 3 others, Bønnelykke, Klaus, Stokholm, Jakob & Weidinger, S., 2021, In: Experimental Dermatology. 30, 10, p. 1517-1531

    Research output: Contribution to journal › Review › Research › peer-review

  23. Published

    Classification of lytic bacteriophages attacking dairy Leuconostoc starter strains

    Ali, Y., Kot, Witold, Atamer, Z., Hinrichs, J., Vogensen, Finn Kvist, Heller, K. J. & Neve, H., 2013, In: Applied and Environmental Microbiology. 79, 12, p. 3628-3636 9 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  24. Published

    Reducing the atypical odour of dawadawa: effect of modification offermentation conditions and post-fermentation treatment on thedevelopment of the atypical odour of dawadawa

    Amoa-Awua, W. K., Awusi, B., Owusu, M., Appiah, V., Ofori, H., Thorsen, L. & Jespersen, Lene, 2014, In: Food Control. 42, p. 335-342 8 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  25. Published

    2-heptyl-formononetin increases cholesterol and induces hepatic steatosis in mice

    Andersen, C., Schjoldager, J. G., Tortzen, C., Vegge, A., Hufeldt, M. R., Skaanild, M. T., Vogensen, Finn Kvist, Kristiansen, Karsten, Hansen, Axel Kornerup & Nielsen, J., 2013, In: Journal of Biomedicine and Biotechnology. 2013, 13 p., 926942.

    Research output: Contribution to journal › Journal article › Research › peer-review

  26. Published

    Dietary proanthocyanidins promote localized antioxidant responses in porcine pulmonary and gastrointestinal tissues during Ascaris suum-induced type 2 inflammation

    Andersen-Civil, A. I. S., Myhill, L. J., Büdeyri Gökgöz, Nilay, Engström, M. T., Mejer, Helena, Zhu, L., Zeller, W. E., Salminen, J. P., Krych, Lukasz, Lauridsen, C., Nielsen, Dennis Sandris, Thamsborg, Stig Milan & Williams, Andrew Richard, 2022, In: FASEB Journal. 36, 4, e22256.

    Research output: Contribution to journal › Journal article › Research › peer-review

  27. Published

    Inhibition of ochratoxigenic moulds by Debaryomyces hansenii strains for biopreservation of dry-cured meat products

    Andrade, M. J., Thorsen, L., Rodríguez, A., Córdoba, J. J. & Jespersen, Lene, 2014, In: International Journal of Food Microbiology. 170, p. 70-77 8 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  28. Published

    Fate of CMY-2-Encoding Plasmids Introduced into the Human Fecal Microbiota by Exogenous Escherichia coli

    Anjum, M., Madsen, Jonas Stenløkke, Nesme, Joseph, Jana, B., Wiese, M., Jasinskyte, D., Nielsen, Dennis Sandris, Sørensen, Søren Johannes, Dalsgaard, Anders, Moodley, Arshnee, Bortolaia, V. & Guardabassi, Luca, 2019, In: Antimicrobial Agents and Chemotherapy. 63, 5, 13 p., e02528-18.

    Research output: Contribution to journal › Journal article › Research › peer-review

  29. Published

    A culture-independent method for studying transfer of IncI1 plasmids from wild-type Escherichia coli in complex microbial communities

    Anjum, M., Madsen, Jonas Stenløkke, Espinosa-Gongora, C., Jana, B., Wiese, M., Nielsen, Dennis Sandris, Sørensen, Søren Johannes, Moodley, Arshnee, Bortolaia, V. & Guardabassi, Luca, Sep 2018, In: Journal of Microbiological Methods. 152, p. 18-26 9 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  30. Published

    Delayed Gut Colonization Shapes Future Allergic Responses in a Murine Model of Atopic Dermatitis

    Arildsen, A. W., Zachariassen, L. F., Krych, Lukasz, Hansen, Axel Kornerup & Hansen, Camilla Hartmann Friis, 2021, In: Frontiers in Immunology. 12, 650621.

    Research output: Contribution to journal › Journal article › Research › peer-review

  31. Published

    Metabolic maturation in the infant urine during the first 3 months of life

    Astono, J., Poulsen, K. O., Larsen, R. A., Jessen, E. V., Sand, C. B., Rasmussen, Morten Arendt & Sundekilde, U. K., 2024, In: Scientific Reports. 14, 11 p., 5697.

    Research output: Contribution to journal › Journal article › Research › peer-review

  32. Published

    Microbial Diversity and Metabolite Profile of Fermenting Millet in the Production of Hausa koko, a Ghanaian Fermented Cereal Porridge

    Atter, A., Diaz, M., Tano-Debrah, K., Kunadu, A. P., Mayer, M. J., Colquhoun, I. J., Nielsen, Dennis Sandris, Baker, D., Narbad, A. & Amoa-Awua, W., 2021, In: Frontiers in Microbiology. 12, 15 p., 681983.

    Research output: Contribution to journal › Journal article › Research › peer-review

  33. Published

    Role of volatiles in antifungal activity of a Lactobacillus paracasei against Penicillium strains

    Aunsbjerg, S. D., Honoré, A. H., Ebrahimi, Parvaneh, Vogensen, Finn Kvist, Skov, T. & Knoechel, Susanne, 2015. 1 p.

    Research output: Contribution to conference › Conference abstract for conference › Research

  34. Published

    Development of a chemically defined medium for studying foodborne bacterial-fungal interactions

    Aunsbjerg, S. D., Honoré, A. H., Vogensen, Finn Kvist & Knoechel, Susanne, 2015, In: International Dairy Journal. 45, p. 48-55 8 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  35. Published

    Real-time monitoring of fungal inhibition and morphological changes

    Aunsbjerg, S. D., Andersen, K. R. & Knoechel, Susanne, 2015, In: Journal of Microbiological Methods. 119, p. 196-202 7 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  36. Published

    Contribution of volatiles to the antifungal effect of Lactobacillus paracasei in defined medium and yogurt

    Aunsbjerg, S. D., Honoré, A. H., Marcussen, J., Ebrahimi, Parvaneh, Vogensen, Finn Kvist, Benfeldt, C., Skov, T. & Knoechel, Susanne, 2015, In: International Journal of Food Microbiology. 194, p. 46-53 8 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  37. Published

    Critical review on biofilm methods

    Azeredo, J., Azevedo, N. F., Briandet, R., Cerca, N., Coenye, T., Costa, A. R., Desvaux, M., Di Bonaventura, G., Hébraud, M., Jaglic, Z., Kačániová, M., Knoechel, Susanne, Lourenço, A., Mergulhão, F., Meyer, R. L., Nychas, G., Simões, M., Tresse, O. & Sternberg, C., 2017, In: Critical Reviews in Microbiology. 43, 3, p. 313-351 39 p.

    Research output: Contribution to journal › Review › Research › peer-review

  38. Published

    The impact of bacterial exposure in early life on lung surfactant gene expression, function and respiratory rate in germ-free mice

    Barfod, Kenneth Klingenberg, Lui, J. C., Hansen, Signe Schmidt Kjølner, Sengupta, S., Zachariassen, L. S. F., Hansen, Axel Kornerup & Sørli, J. B., 2023, In: Frontiers in Microbiomes. 2, 12 p., 1085508.

    Research output: Contribution to journal › Journal article › Research › peer-review

  39. Published

    Identification of the predominant microbiota during production of lait caillé, a spontaneously fermented milk product made in Burkina Faso

    Bayili, G. R., Johansen, P., Nielsen, Dennis Sandris, Sawadogo-Lingani, H., Ouédraogo, G., Diawara, B. & Jespersen, Lene, 2019, In: World journal of microbiology & biotechnology. 35, 7, 13 p., 100.

    Research output: Contribution to journal › Journal article › Research › peer-review

  40. Published

    Effect of fermentation process on hygiene and perceived quality of lait caillé, an ethnic milk product from Burkina Faso

    Bayili, G. R., Konkobo-Yaméogo, C., Diarra, S., Diawara, B., Jespersen, Lene & Sawadogo-Lingani, H., 2023, In: Journal of Ethnic Foods. 10, 13 p., 17.

    Research output: Contribution to journal › Journal article › Research › peer-review

  41. Published

    16S rRNA gene sequencing of non-lactic acid bacteria cultures from lait caillé in Burkina Faso

    Bayili, G. R., Compaoré, C. S., Diawara, B., Jespersen, Lene & Sawadogo-Lingani, H., 2024, In: All Life. 17, 1, 8 p., 2309346.

    Research output: Contribution to journal › Journal article › Research › peer-review

  42. Published

    Technological properties of indigenous Lactococcus lactis strains isolated from Lait caillé, a spontaneous fermented milk from Burkina Faso

    Bayili, G. R., Johansen, P. G., Hougaard, Anni Bygvrå, Diawara, B., Ouedraogo, G. A., Jespersen, Lene & Sawadogo-Lingani, H., 2020, In: Journal of Dairy Research. 87, 1, p. 110-116 7 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  43. Published

    Oenococcus oeni, a species born and moulded in wine: a critical review of the stress impacts of wine and the physiological responses

    Bech-Terkilsen, S., Westman, J. O., Swiegers, J. H. & Siegumfeldt, Henrik, 2020, In: Australian Journal of Grape and Wine Research. 26, 3, p. 188-206

    Research output: Contribution to journal › Review › Research › peer-review

  44. Published

    The meaning of life for lactic acid bacteria: how to measure life, stress and death in production and application

    Bech-Terkilsen, S., 2021, Department of Food Science, Faculty of Science, University of Copenhagen. 142 p.

    Research output: Book/Report › Ph.D. thesis › Research

  45. Published

    Counteracting age-related loss of skeletal muscle mass: a clinical and ethnological trial on the role of protein supplementation and training load (CALM Intervention Study): study protocol for a randomized controlled trial

    Bechshøft, R., Reitelseder, S., Højfeldt, Grith Stougaard, Castro Mejia, J. L., Khakimov, Bekzod, Bin Ahmad, H. F., Kjær, Michael, Engelsen, Søren Balling, Laugesen, S. M. B., Rasmussen, Morten Arendt, Lassen, Aske Juul, Jensen, T., Beyer, N., Serena, A., Perez-Cueto, Federico J.A., Nielsen, Dennis Sandris, Jespersen, Astrid Pernille & Holm, L., 2016, In: Trials. 17, 17 p., 397.

    Research output: Contribution to journal › Journal article › Research › peer-review

  46. Published

    Wine Yeast as Potential Biological Control Agent Against Downy Mildew of Grapevine (Plasmopara viticola)

    Behrendt, R. A., Toldam-Andersen, Torben, Arneborg, Nils, Collinge, David B. & Jensen, Birgit, 2024, Proceedings of the 21st International Conference on Organic Fruit- Growing. p. 51-57 7 p.

    Research output: Chapter in Book/Report/Conference proceeding › Article in proceedings › Research › peer-review

  47. Published

    Effect of early-life gut mucosal compromise on disease progression in NOD mice

    Bendtsen, K. M., Hansen, Camilla Hartmann Friis, Krych, Lukasz, Buschard, K., Farlov, H. & Hansen, Axel Kornerup, 2017, In: Comparative Medicine. 67, 5, p. 388-399 12 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  48. Published

    The influence of the young microbiome on inflammatory diseases - lessons from animal studies

    Bendtsen, K. M. B., Fisker, L., Hansen, Axel Kornerup, Hansen, Camilla Hartmann Friis & Nielsen, Dennis Sandris, 2015, In: Birth Defects Research. Part C: Embryo Today Reviews (Print). 105, 4, p. 278-295 18 p.

    Research output: Contribution to journal › Review › Research › peer-review

  49. Published

    Immunological effects of reduced mucosal integrity in the early life of BALB/c mice

    Bendtsen, K. M. B., Hansen, Camilla Hartmann Friis, Krych, Lukasz, Skovgaard, K., Kot, W. P., Vogensen, Finn Kvist & Hansen, Axel Kornerup, 2017, In: PLOS ONE. 12, 5, 20 p., 0176662.

    Research output: Contribution to journal › Journal article › Research › peer-review

  50. Published

    Traditional Fermented Dairy Products of Ethiopia: A Review

    Berhe, T., Vogensen, Finn Kvist, Ipsen, Richard, Seifu, E., Kurtu, M. Y. & Hansen, E. B., 2017, In: East African Journal of Sciences. 11, 2, p. 73-80 8 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

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