Food Microbiology, Gut Health, and Fermentation

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  1. Published

    High-dose vitamin D3 supplementation in pregnancy and risk of neurodevelopmental disorders in the children at age 10: A randomized clinical trial

    Aagaard, K., Jepsen, J. R. M., Sevelsted, A., Horner, D., Vinding, R., Rosenberg, J. B., Brustad, N., Eliasen, A., Mohammadzadeh, P., Følsgaard, N., Hernández-lorca, M., Fagerlund, Birgitte, Glenthøj, Birte Yding, Rasmussen, Morten Arendt, Bilenberg, N., Stokholm, Jakob, Bønnelykke, Klaus, Ebdrup, Bjørn & Chawes, Bo Lund Krogsgaard, 2024, In: The American Journal of Clinical Nutrition. 119, 2, p. 362-370 9 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  2. Published

    A Gently Processed Skim Milk-Derived Whey Protein Concentrate for Infant Formula: Effects on Gut Development and Immunity in Preterm Pigs

    Aasmul-Olsen, Karoline, Akıllıoğlu, H. G., Christiansen, Line Iadsatian, Engholm-Keller, Kasper, Brunse, Anders, Stefanova, Denitsa Vladimirova, Bjørnshave, A., Bechshøft, M. R., Skovgaard, K., Thymann, Thomas, Sangild, Per Torp, Lund, Marianne N. & Bering, S. B., 2024, In: Molecular Nutrition and Food Research. 68, 6, 2300458.

    Research output: Contribution to journal › Journal article › Research › peer-review

  3. Published

    Screening for Bacillus subtilis group isolates that degrade cyanogens at pH 4.5-5.0.

    Abban, S., Brimer, L., Abdelgadir, W. S., Jakobsen, M. & Thorsen, L., 2013, In: International Journal of Food Microbiology. 161, 1, p. 31-35 5 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  4. Published

    A practical evaluation of detergent and disinfectant solutions on cargo container surfaces for bacteria inactivation efficacy and effect on material corrosion

    Abban, S., Jakobsen, M. & Jespersen, Lene, 2013, In: African Journal of Biotechnology. 12, 23, p. 3689-3698 10 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  5. Published

    Assessment of interplay between UV wavelengths, material surfaces and food residues in open surface hygiene validation

    Abban, S., Jakobsen, M. & Jespersen, Lene, 2014, In: Journal of Food Science and Technology. 51, 12, p. 3977-3983 7 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  6. Published

    Microbial behaviour and cross contamination between cargoes in containerized transportation of food

    Abban, S., 2013, Department of Food Science, University of Copenhagen. 183 p.

    Research output: Book/Report › Ph.D. thesis › Research

  7. Published

    Oropharyngeal Microbiota Clusters in Children with Asthma or Wheeze Associate with Allergy, Blood Transcriptomic Immune Pathways, and Exacerbation Risk

    U-BIOPRED Study Group, U. S. G., 2023, In: American Journal of Respiratory and Critical Care Medicine. 208, 2, p. 142-154 13 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  8. Published

    Lactobacillus delbrueckii subsp. jakobsenii subsp. nov., isolated from dolo wort, an alcoholic fermented beverage in Burkina Faso

    Adimpong, D. B., Nielsen, Dennis Sandris, Sørensen, K. I., Vogensen, Finn Kvist, Sawadogo-Lingani, H., Derkx, P. M. F. & Jespersen, Lene, 2013, In: International Journal of Systematic and Evolutionary Microbiology. 63, 11, p. 3720-3726 7 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  9. Published

    Draft whole-genome sequence of Bacillus sonorensis strain L12, a source of nonribosomal lipopeptides

    Adimpong, D. B., Sørensen, K. I., Nielsen, Dennis Sandris, Thorsen, L., Rasmussen, T. B., Derkx, P. M. F. & Jespersen, Lene, 2013, In: Genome Announcements. 1, 2, 2 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  10. Published

    Geno- and phenotypic characterization of lactic acid bacteria and Bacillus spp. strains isolated from African indigenous fermented food products and their applications in the food and feed industries

    Adimpong, D. B., 2013, Department of Food Science, University of Copenhagen. 137 p.

    Research output: Book/Report › Ph.D. thesis › Research

  11. Published

    Biodiversity of aerobic endospore-forming bacterial species occurring in Yanyanku and Ikpiru, fermented seeds of Hibiscus sabdariffa used to produce food condiments in Benin

    Agbobatinkpo, P. B., Thorsen, L., Nielsen, Dennis Sandris, Azokpota, P., Akissoe, N., Hounhouigan, J. D. & Jakobsen, M., 2013, In: International Journal of Food Microbiology. 163, 2-3, p. 231-238 8 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  12. Published

    Impaired skeletal muscle hypertrophy signaling and amino acid deprivation response in Apoe knockout mice with an unhealthy lipoprotein distribution

    Agergaard, J., Zillmer, M. C. F., Castro-Mejía, J. L., Mertz, K., Kot, Witold, Højfeldt, Grith Stougaard, van Hall, Gerrit, Nielsen, Dennis Sandris, Schjerling, Peter & Holm, Lars Morten, 2021, In: Scientific Reports. 11, 15 p., 16423.

    Research output: Contribution to journal › Journal article › Research › peer-review

  13. Published

    Draft Genome Sequence of Streptococcus anginosus Strain CALM001, Isolated from the Gut of an Elderly Dane

    Ahmad, H. F., Schreiber, L., Marshall, I. P. G., Andersen, P. J., Castro Mejia, J. L. & Nielsen, Dennis Sandris, 2019, In: Microbiology resource announcements. 8, 24, 2 p., e00379-19.

    Research output: Contribution to journal › Journal article › Research › peer-review

  14. Published

    IDDF2020-ABS-0174 Onset of hypertriglyceridemia in relation to dietary intake, gut microbiome and metabolomics signatures among home dwelling elderly

    Ahmad, H. F., Mejia, J. L. C., Krych, Lukasz, Khakimov, Bekzod, Kot, W., Bechshoft, R. L., Reitelseder, S., Engelsen, Søren Balling, Holm, L. & Faust, K., 2020, In: Gut. 69, Suppl 2, p. A21-A21 1 p.

    Research output: Contribution to journal › Conference abstract in journal › Research › peer-review

  15. Published

    Nutrient Restriction has Limited Short-Term Effects on Gut, Immunity, and Brain Development in Preterm Pigs

    Ahnfeldt, Agnethe May, Bæk, Ole, Hui, Y., Nielsen, Charlotte Holme, Obelitz-Ryom, K., Busk-Anderson, T., Ruge, A., Holst, Jens Juul, Rudloff, S., Burrin, D., Nguyen, Duc Ninh, Nielsen, Dennis Sandris, Zachariassen, G., Bering, S. B., Thymann, Thomas & Sangild, Per Torp, 2020, In: The Journal of Nutrition. 150, 5, p. 1196-1207

    Research output: Contribution to journal › Journal article › Research › peer-review

  16. Published

    Taxonomic and molecular characterization of lactic acid bacteria and yeasts in nunu, a Ghanaian fermented milk product

    Akabanda, F., Owusu-Kwarteng, J., Tano-Debrah, K., Glover, R. L. K., Nielsen, Dennis Sandris & Jespersen, Lene, 2013, In: Food Microbiology. 34, 2, p. 277-283 7 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  17. Published

    The use of lactic acid bacteria starter culture in the production of Nunu, a spontaneously fermented milk product in Ghana

    Akabanda, F., Owusu-Kwarteng, J., Tano-Debrah, K., Parkouda, C. & Jespersen, Lene, 2014, In: International Journal of Food Science. 2014, 12 p., 721067.

    Research output: Contribution to journal › Journal article › Research › peer-review

  18. Published

    Interaction between sodium chloride and texture in semi-hard Danish cheese as affected by brining time, DL-starter culture, chymosin type and cheese ripening

    Akkerman, M., Søndergaard, L., Jespersen, Lene, Ryssel, M., Mackie, A., Larsen, N. N., Andersen, U., Nørgaard, M. K., Løkke, M. M., Møller, J. R., Mielby, L. A., Andersen, B. V., Kidmose, U. & Hammershøj, M., 2017, In: International Dairy Journal. 70, p. 34-45 12 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  19. Published

    Dominance of Saccharomyces cerevisiae in alcoholic fermentation processes: role of physiological fitness and microbial interactions

    Albergaria, H. & Arneborg, Nils, 2016, In: Applied Microbiology and Biotechnology. 100, 5, p. 2035-2046 12 p.

    Research output: Contribution to journal › Review › Research › peer-review

  20. Published

    Supplementation with inulin-type fructans affects gut microbiota and attenuates some of the cardiometabolic benefits of a plant-based diet in individuals with overweight or obesity

    Aldubayan, Mona Adnan Y, Mao, Xiaotian, Laursen, M. F., Pigsborg, Kristina, Christensen, Lars, Roager, Henrik Munch, Nielsen, Dennis Sandris, Hjorth, Mads Fiil & Magkos, Faidon, 2023, In: Frontiers in Nutrition. 10, 13 p., 1108088.

    Research output: Contribution to journal › Journal article › Research › peer-review

  21. Published

    Rheological and sensory properties and aroma compounds formed during ripening of soft brined cheese made from camel milk

    Alemu, Y. H., Hansen, E. B., Seifu, E., Petersen, Mikael Agerlin, Lametsch, Rene, Rattray, F. P. & Ipsen, Richard, 2018, In: International Dairy Journal. 81, p. 122-130 9 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  22. Published

    The power and potential of BIOMAP to elucidate host-microbiome interplay in skin inflammatory diseases

    Alenius, H., Sinkko, H., Moitinho-Silva, L., Rodriguez, E., Broderick, C., Alexander, H., Reiger, M., Hjelmsø, M. H., Fyhrquist, N., Olah, P., Bryce, P., Smith, C., Koning, F., Eyerich, K., Greco, D., van den Bogaard, E. H., Neumann, A. U., Traidl-Hoffmann, C., Homey, B., Flohr, C. & 3 others, Bønnelykke, Klaus, Stokholm, Jakob & Weidinger, S., 2021, In: Experimental Dermatology. 30, 10, p. 1517-1531

    Research output: Contribution to journal › Review › Research › peer-review

  23. Published

    Classification of lytic bacteriophages attacking dairy Leuconostoc starter strains

    Ali, Y., Kot, Witold, Atamer, Z., Hinrichs, J., Vogensen, Finn Kvist, Heller, K. J. & Neve, H., 2013, In: Applied and Environmental Microbiology. 79, 12, p. 3628-3636 9 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  24. Published

    Reducing the atypical odour of dawadawa: effect of modification offermentation conditions and post-fermentation treatment on thedevelopment of the atypical odour of dawadawa

    Amoa-Awua, W. K., Awusi, B., Owusu, M., Appiah, V., Ofori, H., Thorsen, L. & Jespersen, Lene, 2014, In: Food Control. 42, p. 335-342 8 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  25. Published

    2-heptyl-formononetin increases cholesterol and induces hepatic steatosis in mice

    Andersen, C., Schjoldager, J. G., Tortzen, C., Vegge, A., Hufeldt, M. R., Skaanild, M. T., Vogensen, Finn Kvist, Kristiansen, Karsten, Hansen, Axel Kornerup & Nielsen, J., 2013, In: Journal of Biomedicine and Biotechnology. 2013, 13 p., 926942.

    Research output: Contribution to journal › Journal article › Research › peer-review

  26. Published

    Dietary proanthocyanidins promote localized antioxidant responses in porcine pulmonary and gastrointestinal tissues during Ascaris suum-induced type 2 inflammation

    Andersen-Civil, A. I. S., Myhill, L. J., Büdeyri Gökgöz, Nilay, Engström, M. T., Mejer, Helena, Zhu, L., Zeller, W. E., Salminen, J. P., Krych, Lukasz, Lauridsen, C., Nielsen, Dennis Sandris, Thamsborg, Stig Milan & Williams, Andrew Richard, 2022, In: FASEB Journal. 36, 4, e22256.

    Research output: Contribution to journal › Journal article › Research › peer-review

  27. Published

    Inhibition of ochratoxigenic moulds by Debaryomyces hansenii strains for biopreservation of dry-cured meat products

    Andrade, M. J., Thorsen, L., Rodríguez, A., Córdoba, J. J. & Jespersen, Lene, 2014, In: International Journal of Food Microbiology. 170, p. 70-77 8 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  28. Published

    Fate of CMY-2-Encoding Plasmids Introduced into the Human Fecal Microbiota by Exogenous Escherichia coli

    Anjum, M., Madsen, Jonas Stenløkke, Nesme, Joseph, Jana, B., Wiese, M., Jasinskyte, D., Nielsen, Dennis Sandris, Sørensen, Søren Johannes, Dalsgaard, Anders, Moodley, Arshnee, Bortolaia, V. & Guardabassi, Luca, 2019, In: Antimicrobial Agents and Chemotherapy. 63, 5, 13 p., e02528-18.

    Research output: Contribution to journal › Journal article › Research › peer-review

  29. Published

    A culture-independent method for studying transfer of IncI1 plasmids from wild-type Escherichia coli in complex microbial communities

    Anjum, M., Madsen, Jonas Stenløkke, Espinosa-Gongora, C., Jana, B., Wiese, M., Nielsen, Dennis Sandris, Sørensen, Søren Johannes, Moodley, Arshnee, Bortolaia, V. & Guardabassi, Luca, Sep 2018, In: Journal of Microbiological Methods. 152, p. 18-26 9 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  30. Published

    Delayed Gut Colonization Shapes Future Allergic Responses in a Murine Model of Atopic Dermatitis

    Arildsen, A. W., Zachariassen, L. F., Krych, Lukasz, Hansen, Axel Kornerup & Hansen, Camilla Hartmann Friis, 2021, In: Frontiers in Immunology. 12, 650621.

    Research output: Contribution to journal › Journal article › Research › peer-review

  31. Published

    Metabolic maturation in the infant urine during the first 3 months of life

    Astono, J., Poulsen, K. O., Larsen, R. A., Jessen, E. V., Sand, C. B., Rasmussen, Morten Arendt & Sundekilde, U. K., 2024, In: Scientific Reports. 14, 11 p., 5697.

    Research output: Contribution to journal › Journal article › Research › peer-review

  32. Published

    Microbial Diversity and Metabolite Profile of Fermenting Millet in the Production of Hausa koko, a Ghanaian Fermented Cereal Porridge

    Atter, A., Diaz, M., Tano-Debrah, K., Kunadu, A. P., Mayer, M. J., Colquhoun, I. J., Nielsen, Dennis Sandris, Baker, D., Narbad, A. & Amoa-Awua, W., 2021, In: Frontiers in Microbiology. 12, 15 p., 681983.

    Research output: Contribution to journal › Journal article › Research › peer-review

  33. Published

    Role of volatiles in antifungal activity of a Lactobacillus paracasei against Penicillium strains

    Aunsbjerg, S. D., Honoré, A. H., Ebrahimi, Parvaneh, Vogensen, Finn Kvist, Skov, T. & Knoechel, Susanne, 2015. 1 p.

    Research output: Contribution to conference › Conference abstract for conference › Research

  34. Published

    Development of a chemically defined medium for studying foodborne bacterial-fungal interactions

    Aunsbjerg, S. D., Honoré, A. H., Vogensen, Finn Kvist & Knoechel, Susanne, 2015, In: International Dairy Journal. 45, p. 48-55 8 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  35. Published

    Real-time monitoring of fungal inhibition and morphological changes

    Aunsbjerg, S. D., Andersen, K. R. & Knoechel, Susanne, 2015, In: Journal of Microbiological Methods. 119, p. 196-202 7 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  36. Published

    Contribution of volatiles to the antifungal effect of Lactobacillus paracasei in defined medium and yogurt

    Aunsbjerg, S. D., Honoré, A. H., Marcussen, J., Ebrahimi, Parvaneh, Vogensen, Finn Kvist, Benfeldt, C., Skov, T. & Knoechel, Susanne, 2015, In: International Journal of Food Microbiology. 194, p. 46-53 8 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  37. Published

    Critical review on biofilm methods

    Azeredo, J., Azevedo, N. F., Briandet, R., Cerca, N., Coenye, T., Costa, A. R., Desvaux, M., Di Bonaventura, G., Hébraud, M., Jaglic, Z., Kačániová, M., Knoechel, Susanne, Lourenço, A., Mergulhão, F., Meyer, R. L., Nychas, G., Simões, M., Tresse, O. & Sternberg, C., 2017, In: Critical Reviews in Microbiology. 43, 3, p. 313-351 39 p.

    Research output: Contribution to journal › Review › Research › peer-review

  38. Published

    The impact of bacterial exposure in early life on lung surfactant gene expression, function and respiratory rate in germ-free mice

    Barfod, Kenneth Klingenberg, Lui, J. C., Hansen, Signe Schmidt Kjølner, Sengupta, S., Zachariassen, L. S. F., Hansen, Axel Kornerup & Sørli, J. B., 2023, In: Frontiers in Microbiomes. 2, 12 p., 1085508.

    Research output: Contribution to journal › Journal article › Research › peer-review

  39. Published

    Identification of the predominant microbiota during production of lait caillé, a spontaneously fermented milk product made in Burkina Faso

    Bayili, G. R., Johansen, P., Nielsen, Dennis Sandris, Sawadogo-Lingani, H., Ouédraogo, G., Diawara, B. & Jespersen, Lene, 2019, In: World journal of microbiology & biotechnology. 35, 7, 13 p., 100.

    Research output: Contribution to journal › Journal article › Research › peer-review

  40. Published

    Effect of fermentation process on hygiene and perceived quality of lait caillé, an ethnic milk product from Burkina Faso

    Bayili, G. R., Konkobo-Yaméogo, C., Diarra, S., Diawara, B., Jespersen, Lene & Sawadogo-Lingani, H., 2023, In: Journal of Ethnic Foods. 10, 13 p., 17.

    Research output: Contribution to journal › Journal article › Research › peer-review

  41. Published

    16S rRNA gene sequencing of non-lactic acid bacteria cultures from lait caillé in Burkina Faso

    Bayili, G. R., Compaoré, C. S., Diawara, B., Jespersen, Lene & Sawadogo-Lingani, H., 2024, In: All Life. 17, 1, 8 p., 2309346.

    Research output: Contribution to journal › Journal article › Research › peer-review

  42. Published

    Technological properties of indigenous Lactococcus lactis strains isolated from Lait caillé, a spontaneous fermented milk from Burkina Faso

    Bayili, G. R., Johansen, P. G., Hougaard, Anni Bygvrå, Diawara, B., Ouedraogo, G. A., Jespersen, Lene & Sawadogo-Lingani, H., 2020, In: Journal of Dairy Research. 87, 1, p. 110-116 7 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  43. Published

    Oenococcus oeni, a species born and moulded in wine: a critical review of the stress impacts of wine and the physiological responses

    Bech-Terkilsen, S., Westman, J. O., Swiegers, J. H. & Siegumfeldt, Henrik, 2020, In: Australian Journal of Grape and Wine Research. 26, 3, p. 188-206

    Research output: Contribution to journal › Review › Research › peer-review

  44. Published

    The meaning of life for lactic acid bacteria: how to measure life, stress and death in production and application

    Bech-Terkilsen, S., 2021, Department of Food Science, Faculty of Science, University of Copenhagen. 142 p.

    Research output: Book/Report › Ph.D. thesis › Research

  45. Published

    Counteracting age-related loss of skeletal muscle mass: a clinical and ethnological trial on the role of protein supplementation and training load (CALM Intervention Study): study protocol for a randomized controlled trial

    Bechshøft, R., Reitelseder, S., Højfeldt, Grith Stougaard, Castro Mejia, J. L., Khakimov, Bekzod, Bin Ahmad, H. F., Kjær, Michael, Engelsen, Søren Balling, Laugesen, S. M. B., Rasmussen, Morten Arendt, Lassen, Aske Juul, Jensen, T., Beyer, N., Serena, A., Perez-Cueto, Federico J.A., Nielsen, Dennis Sandris, Jespersen, Astrid Pernille & Holm, L., 2016, In: Trials. 17, 17 p., 397.

    Research output: Contribution to journal › Journal article › Research › peer-review

  46. Published

    Wine Yeast as Potential Biological Control Agent Against Downy Mildew of Grapevine (Plasmopara viticola)

    Behrendt, R. A., Toldam-Andersen, Torben, Arneborg, Nils, Collinge, David B. & Jensen, Birgit, 2024, Proceedings of the 21st International Conference on Organic Fruit- Growing. p. 51-57 7 p.

    Research output: Chapter in Book/Report/Conference proceeding › Article in proceedings › Research › peer-review

  47. Published

    Effect of early-life gut mucosal compromise on disease progression in NOD mice

    Bendtsen, K. M., Hansen, Camilla Hartmann Friis, Krych, Lukasz, Buschard, K., Farlov, H. & Hansen, Axel Kornerup, 2017, In: Comparative Medicine. 67, 5, p. 388-399 12 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  48. Published

    The influence of the young microbiome on inflammatory diseases - lessons from animal studies

    Bendtsen, K. M. B., Fisker, L., Hansen, Axel Kornerup, Hansen, Camilla Hartmann Friis & Nielsen, Dennis Sandris, 2015, In: Birth Defects Research. Part C: Embryo Today Reviews (Print). 105, 4, p. 278-295 18 p.

    Research output: Contribution to journal › Review › Research › peer-review

  49. Published

    Immunological effects of reduced mucosal integrity in the early life of BALB/c mice

    Bendtsen, K. M. B., Hansen, Camilla Hartmann Friis, Krych, Lukasz, Skovgaard, K., Kot, W. P., Vogensen, Finn Kvist & Hansen, Axel Kornerup, 2017, In: PLOS ONE. 12, 5, 20 p., 0176662.

    Research output: Contribution to journal › Journal article › Research › peer-review

  50. Published

    Traditional Fermented Dairy Products of Ethiopia: A Review

    Berhe, T., Vogensen, Finn Kvist, Ipsen, Richard, Seifu, E., Kurtu, M. Y. & Hansen, E. B., 2017, In: East African Journal of Sciences. 11, 2, p. 73-80 8 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  51. Published

    The impact of different ale brewer’s yeast strains on the proteome of immature beer

    Berner, T. S., Jacobsen, S. & Arneborg, Nils, 2013, In: B M C Microbiology. 13, 8 p., 215.

    Research output: Contribution to journal › Journal article › Research › peer-review

  52. Published

    Pulmonary toxicity and translocation of gallium phosphide nanowires to secondary organs following pulmonary exposure in mice

    Berthing, T., Lard, M., Danielsen, P. H., Abariute, L., Barfod, Kenneth Klingenberg, Adolfsson, K., Knudsen, K. B., Wolff, H., Prinz, C. N. & Vogel, U., 2023, In: Journal of Nanobiotechnology. 21, 18 p., 322.

    Research output: Contribution to journal › Journal article › Research › peer-review

  53. Published

    In vitro modulation of human gut microbiota composition and metabolites by Bifidobacterium longum BB-46 and a citric pectin

    Bianchi, F., Larsen, Nadja, Tieghi, T. D. M., Adorno, M. A. T., Saad, S. M. I., Jespersen, Lene & Sivieri, K., 2019, In: Food Research International. 120, p. 595-602

    Research output: Contribution to journal › Journal article › Research › peer-review

  54. Published

    Modulation of gut microbiota from healthy-weight and obese individuals by pectin, by-products of tropical fruits and probiotic strains

    Bianchi, F., 2019, Department of Food Science, Faculty of Science, University of Copenhagen. 219 p.

    Research output: Book/Report › Ph.D. thesis › Research

  55. Published

    Modulation of gut microbiota from obese individuals by in vitro fermentation of citrus pectin in combination with Bifidobacterium longum BB-46

    Bianchi, F., Larsen, Nadja, de Mello Tieghi, T., Tallarico Adorno, M. A., Kot, W., Saad, S. M. I., Jespersen, Lene & Sivieri, K., 2018, In: Applied Microbiology and Biotechnology. 102, 20, p. 8827-8840 14 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  56. Published

    The gut mycobiome of elderly danes

    Bin Ahmad, H. F., Castro Mejia, J. L., Kot, W., Bechshøft, R. L., Reitelseder, S., Holm, L. & Nielsen, Dennis Sandris, 2016. 1 p.

    Research output: Contribution to conference › Conference abstract for conference › Research

  57. Published

    The Gut Microbiome of Older Danish Adults – with Particular Focus on the Gut Mycobiome

    Bin Ahmad, H. F., 2019, Department of Food Science, Faculty of Science, University of Copenhagen. 199 p.

    Research output: Book/Report › Ph.D. thesis › Research

  58. Published

    Deciphering the association networks of mycobiome communities among the elderly Danes

    Bin Ahmad, H. F., Faust, K., Castro Mejia, J. L., Kot, W., Bechshøft, R., Reitelseder, S., Holm, L. & Nielsen, Dennis Sandris, 2017. 1 p.

    Research output: Contribution to conference › Poster › Research

  59. Published

    The Influence of Diet and Exposure to Antibiotics on Gut Microbiota Development in Early Life

    Bin Shamzir Kamal, S., 2021, Department of Food Science, Faculty of Science, University of Copenhagen. 105 p.

    Research output: Book/Report › Ph.D. thesis › Research

  60. Published

    Influence of commercial baker's yeasts on bread aroma profiles

    Birch, A. N., Petersen, Mikael Agerlin, Arneborg, Nils & Hansen, Åse Solvej, 2013, In: Food Research International. 52, 1, p. 160-166 7 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  61. Published

    Enteral but not parenteral antibiotics enhance gut function and prevent necrotizing enterocolitis in formula-fed newborn preterm pigs

    Birck, M. M., Nguyen, Duc Ninh, Cilieborg, Malene Skovsted, Bin Shamzir Kamal, S., Nielsen, Dennis Sandris, Damborg, Peter Panduro, Olsen, John Elmerdahl, Lauridsen, C., Sangild, Per Torp & Thymann, Thomas, 2016, In: American Journal of Physiology: Gastrointestinal and Liver Physiology. 310, 5, p. G323-G333 11 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  62. Published

    Atopic and non-atopic effects of fish oil supplementation during pregnancy

    Bisgaard, H., Mikkelsen, M., Rasmussen, Morten Arendt, Sevelsted, A., Schoos, Ann-Marie Malby, Brustad, N., Eliasen, A. U., Thorsen, J., Chawes, Bo Lund Krogsgaard, Gürdeniz, G., Morin, A., Stark, K., Stokholm, Jakob, Ober, C., Pedersen, C. E. T. & Bønnelykke, Klaus, 2023, In: Thorax. 78, 12, p. 1168–1174 7 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  63. Published

    The effect of Lactobacillus paracasei subsp. paracasei L. casei W8® on blood levels of triacylglycerol is independent of colonisation

    Bjerg, A. T., Sørensen, M. B., Krych, Lukasz, Hansen, Lars Hestbjerg, Astrup, A., Kristensen, M. B. & Nielsen, Dennis Sandris, 2015, In: Beneficial Microbes. 6, 3, p. 263-269 7 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  64. Published

    ON-rep-seq as a rapid and cost-effective alternative to whole-genome sequencing for species-level identification and strain-level discrimination of Listeria monocytogenes contamination in a salmon processing plant

    Bjørge Thomassen, G. M., Krych, Lukasz, Knoechel, Susanne & Mehli, L., 2021, In: MicrobiologyOpen. 10, 6, 16 p., e1246.

    Research output: Contribution to journal › Journal article › Research › peer-review

  65. Published

    Turn Up the Heat-Food and Clinical Escherichia coli Isolates Feature Two Transferrable Loci of Heat Resistance

    Boll, E. J., Marti, R., Hasman, H., Overballe-Petersen, S., Stegger, M., Ng, K., Knoechel, Susanne, Krogfelt, K. A., Hummerjohann, J. & Struve, C., 2017, In: Frontiers in Microbiology. 8, 14 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  66. Published

    Controlling the uncontrolled variation in the diet induced obese mouse by microbiomic characterization

    Bondarenko, V., Løkke, Cecillie Reynolds, Dobrowolski, P., Mentzel, Caroline M. Junker, Castro-Mejia, J. L., Hansen, Camilla Hartmann Friis, Sørensen, Dorte Bratbo, Nielsen, Dennis Sandris, Krych, Lukasz & Hansen, Axel Kornerup, 2022, In: Scientific Reports. 12, 12 p., 13767.

    Research output: Contribution to journal › Journal article › Research › peer-review

  67. Published

    Dietary seaweed (Saccharina latissima) supplementation in pigs induces localized immunomodulatory effects and minor gut microbiota changes during intestinal helminth infection

    Bonde, C. S., Mejer, Helena, Myhill, Laura Jessica, Zhu, L., Jensen, Penille, Büdeyri Gökgöz, Nilay, Krych, Lukasz, Nielsen, Dennis Sandris, Skovgaard, K., Thamsborg, Stig Milan & Williams, Andrew Richard, 2023, In: Scientific Reports. 13, 16 p., 21931.

    Research output: Contribution to journal › Journal article › Research › peer-review

  68. Published

    Antimicrobial activity and prebiotic effect of alginate-derived oligosaccharides

    Bouillon, G. A. J. R., 2020, Department of Food Science, Faculty of Science, University of Copenhagen. 161 p.

    Research output: Book/Report › Ph.D. thesis › Research

  69. Published

    Evaluation of the inhibitory effect of alginate oligosaccharide on yeast and mould in yoghurt

    Bouillon, G. A. J. R., Gåserød, O. & Rattray, F. P., 2019, In: International Dairy Journal. 99, 9 p., 104554.

    Research output: Contribution to journal › Journal article › Research › peer-review

  70. Published

    Saccharomyces cerevisiae accumulates GAPDH-derived peptides on its cell surface that induce death of non-Saccharomyces yeasts by cell-to-cell contact

    Branco, P., Kemsawasd, V., Santos, L., Diniz, M., Caldeira, J., Almeida, M. G., Arneborg, Nils & Albergaria, H., 2017, In: F E M S Microbiology Ecology. 93, 5, 10 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  71. Published

    Effect of GAPDH-derived antimicrobial peptides on sensitive yeasts cells: membrane permeability, intracellular pH and H+-influx/-efflux rates

    Branco, P., Albergaria, H., Arneborg, Nils & Prista, C., 2018, In: FEMS Yeast Research. 18, 3, p. 1-8 foy030.

    Research output: Contribution to journal › Journal article › Research › peer-review

  72. Published

    Identification of novel GAPDH-derived antimicrobial peptides secreted by Saccharomyces cerevisiae and involved in wine microbial interactions

    Branco, P., Francisco, D., Chambon, C., Hébraud, M., Arneborg, Nils, Almeida, M. G., Caldeira, J. & Albergaria, H., 2014, In: Applied Microbiology and Biotechnology. 98, 2, p. 843-853 11 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  73. Published

    Antimicrobial properties and death-inducing mechanisms of saccharomycin, a biocide secreted by Saccharomyces cerevisiae

    Branco, P., Francisco, D., Monteiro, M., Almeida, M. G., Caldeira, J., Arneborg, Nils, Prista, C. & Albergaria, H., 2017, In: Applied Microbiology and Biotechnology. 101, 1, p. 159-171 13 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  74. Published

    Antimicrobial peptides (AMPs) produced by Saccharomyces cerevisiae induce alterations in the intracellular pH, membrane permeability and culturability of Hanseniaspora guilliermondii cells

    Branco, P., Monteiro Lomba Viana, T., Albergaria, H. & Arneborg, Nils, 2015, In: International Journal of Food Microbiology. 205, p. 112-118 7 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  75. Published

    Familiarity and identification of everyday food odors in older adults and their influence on hedonic liking

    Broge, Eva Honnens de Lichtenberg, Wendin, Karin Maria Elisabet, Rasmussen, Morten Arendt & Bredie, Wender, 2023, In: Food Quality and Preference. 103, 10 p., 104715.

    Research output: Contribution to journal › Journal article › Research › peer-review

  76. Published

    Fecal filtrate transplantation protects against necrotizing enterocolitis

    Brunse, Anders, Deng, Ling, Pan, X., Hui, Y., Castro Mejia, J. L., Kot, Witold, Nguyen, Duc Ninh, Secher, Jan Bojsen-Møller, Nielsen, Dennis Sandris & Thymann, Thomas, 2022, In: The ISME Journal. 16, p. 686–694

    Research output: Contribution to journal › Journal article › Research › peer-review

  77. Published

    Enteral broad-spectrum antibiotics antagonize the effect of fecal microbiota transplantation in preterm pigs

    Brunse, Anders, Offersen, Simone Margaard, Mosegaard, J. J., Deng, Ling, Damborg, Peter Panduro, Nielsen, Dennis Sandris, Sangild, Per Torp, Thymann, Thomas & Nguyen, Duc Ninh, 2021, In: Gut Microbes. 13, 1, p. 1-16 16 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  78. Published

    Effect of fecal microbiota transplantation route of administration on gut colonization and host response in preterm pigs

    Brunse, Anders, Martin, L., Rasmussen, Torben Sølbeck, Christensen, Lars, Cilieborg, Malene Skovsted, Wiese, M., Khakimov, Bekzod, Pieper, R., Nielsen, Dennis Sandris, Sangild, Per Torp & Thymann, Thomas, 2019, In: ISME Journal. 13, p. 720–733

    Research output: Contribution to journal › Journal article › Research › peer-review

  79. Published

    25-hydroxyvitamin D and risk of atopic diseases and infections in early childhood

    Brustad, N., Kim, M., Skov, F., Schoos, Ann-Marie Malby, Stokholm, Jakob, Bønnelykke, Klaus & Chawes, Bo Lund Krogsgaard, 2023, In: Allergy: European Journal of Allergy and Clinical Immunology. 78, 10, p. 2770-2773

    Research output: Contribution to journal › Comment/debate › Research › peer-review

  80. Published

    High-dose vitamin D during pregnancy and pathway gene polymorphisms in prevention of offspring persistent wheeze

    Brustad, N., Greve, J. H., Mirzakhani, H., Pedersen, C. T., Eliasen, A. U., Stokholm, Jakob, Lasky-Su, J., Bønnelykke, Klaus, Litonjua, A. A., Weiss, S. T., Bisgaard, H. & Chawes, Bo Lund Krogsgaard, 2021, In: Pediatric Allergy and Immunology. 32, 4, p. 679-689 11 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  81. Published

    Safety of High-Dose Vitamin D Supplementation among Children Aged 0 to 6 Years: A Systematic Review and Meta-analysis

    Brustad, N., Yousef, S., Stokholm, Jakob, Bønnelykke, Klaus, Bisgaard, H. & Chawes, Bo Lund Krogsgaard, 2022, In: JAMA network open. 5, 4, 14 p., E227410.

    Research output: Contribution to journal › Review › Research › peer-review

  82. Published

    Diet-associated vertically transferred metabolites and risk of asthma, allergy, eczema, and infections in early childhood

    Brustad, N., Olarini, A., Kim, M., Chen, L., Ali, M., Wang, T., Cohen, A. S., Ernst, M., Hougaard, D., Schoos, Ann-Marie Malby, Stokholm, Jakob, Bønnelykke, Klaus, Lasky-Su, J., Rasmussen, Morten Arendt & Chawes, Bo Lund Krogsgaard, 2023, In: Pediatric Allergy and Immunology. 34, 2, 8 p., e13917.

    Research output: Contribution to journal › Journal article › Research › peer-review

  83. Published

    Intention to buy organic fish among Danish consumers: Application of the segmentation approach and the theory of planned behaviour

    Budhathoki, M., Zølner, A., Nielsen, Thorkild, Rasmussen, Morten Arendt & Reinbach, Helene Christine, 2022, In: Aquaculture. 549, 11 p., 737798.

    Research output: Contribution to journal › Journal article › Research › peer-review

  84. Published

    The response of foodborne pathogens to osmotic and desiccation stresses in the food chain

    Burgess, C. M., Gianotti, A., Gruzdev, N., Holah, J., Knoechel, Susanne, Lehner, A., Margas, E., Esser, S. S., Sela Saldinger, S. & Tresse, O., 2016, In: International Journal of Food Microbiology. 221, p. 37-53 17 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  85. Published

    Application of multivariate data analysis for food quality investigations: An example-based review

    Buvé, C., Saeys, W., Rasmussen, Morten Arendt, Neckebroeck, B., Hendrickx, M., Grauwet, T. & Van Loey, A., 2022, In: Food Research International. 151, 15 p., 110878.

    Research output: Contribution to journal › Review › Research › peer-review

  86. Published

    Classification of Lactococcus lactis cell envelope proteinase based on gene sequencing, peptides formed after hydrolysis of milk, and computer modeling

    Børsting, M. W., Qvist, K. B., Brockmann, E., Vindeløv, J., Pedersen, T. L., Vogensen, Finn Kvist & Ardö, Ylva Margareta, 2015, In: Journal of Dairy Science. 98, 1, p. 68-77 10 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  87. Published

    Influence of proteolytic Lactococcus lactis subsp. cremoris on ripening of reduced-fat Cheddar cheese made with camel chymosin

    Børsting, M. W., Stallknecht, M. K., Vogensen, Finn Kvist & Ardö, Ylva Margareta, 2015, In: International Dairy Journal. 41, p. 38-45 8 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  88. Published

    The effects of extracellular pH and hydroxycinnamic acids influence the intracellular pH of Brettanomyces bruxellensis DSM 7001

    Campolongo, S., Siegumfeldt, Henrik, Aabo, T. A., Cocolin, L. & Arneborg, Nils, 2014, In: Lebensmittel - Wissenschaft und Technologie. 59, 2, Part 1, p. 1088-1092 5 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  89. Published

    Salmonella in eggs: From shopping to consumption - A review providing an evidence-based analysis of risk factors

    Cardoso, M. J., Nicolau, A. I., Borda, D., Nielsen, L., Maia, R. L., Møretrø, T., Ferreira, V., Knoechel, Susanne, Langsrud, S. & Teixeira, P., 2021, In: Comprehensive Reviews in Food Science and Food Safety. 20, 3, p. 2716-2741 26 p.

    Research output: Contribution to journal › Review › Research › peer-review

  90. Published

    Optimizing protocols for extraction of bacteriophages prior to metagenomic analyses of phage communities in the human gut

    Castro Mejia, J. L., Muhammed, Musemma Kedir, Kot, Witold, Neve, H., Franz, C. M. A. P., Hansen, L. H., Vogensen, Finn Kvist & Nielsen, Dennis Sandris, 2015, In: Microbiome. 3, 14 p., 64.

    Research output: Contribution to journal › Journal article › Research › peer-review

  91. Published

    Treatment with a monoclonal anti-IL-12p40 antibody induces substantial gut microbiota changes in an experimental colitis model

    Castro Mejia, J. L., Jakesevic, M., Krych, Lukasz, Nielsen, Dennis Sandris, Hansen, L. H., Sondergaard, B. C., Kvist, P. H., Hansen, Axel Kornerup & Holm, T. L., 2016, In: Gastroenterology Research and Practice. 2016, 12 p., 4953120.

    Research output: Contribution to journal › Journal article › Research › peer-review

  92. Published

    Gut microbiota recovery and immune response in ampicillin-treated mice

    Castro Mejia, J. L., Jakesevic, M., Fabricius, N. F., Krych, Lukasz, Nielsen, Dennis Sandris, Kot, W., Bendtsen, K. M. B., Vogensen, Finn Kvist, Hansen, Camilla Hartmann Friis & Hansen, Axel Kornerup, 2018, In: Research in Veterinary Science. 118, p. 357-364 8 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  93. Published

    Towards understanding the trajectory and interactions of the gut microbiome in healthy older humans

    Castro Mejia, J. L., 2017, Department of Food Science, Faculty of Science, University of Copenhagen.

    Research output: Book/Report › Ph.D. thesis › Research

  94. Published

    Physical fitness in community-dwelling older adults is linked to dietary intake, gut microbiota, and metabolomic signatures

    Castro-Mejia, J. L., Khakimov, B., Krych, L., Bülow, J., Bechshøft, R. L., Højfeldt, G., Mertz, K. H., Garne, E. S., Schacht, S. R., Ahmad, H. F., Kot, W., Hansen, L. H., Perez-Cueto, F. J. A., Lind, M. V., Lassen, A. J., Tetens, I., Jensen, T., Reitelseder, S., Jespersen, A. P., Holm, L. & 2 others, Engelsen, Søren Balling & Nielsen, Dennis Sandris, 2020, In: Aging Cell. 19, 3, 13 p., e13105.

    Research output: Contribution to journal › Journal article › Research › peer-review

  95. Published

    Restitution of gut microbiota in Ugandan children administered with probiotics (Lactobacillus rhamnosus GG and Bifidobacterium animalis subsp. lactis BB-12) during treatment for severe acute malnutrition

    Castro-Mejía, J. L., O’Ferrall, S., Krych, Lukasz, O’Mahony, E., Namusoke, H., Lanyero, B., Kot, Witold, Nabukeera-Barungi, N., Michaelsen, Kim F., Mølgaard, Christian, Friis, Henrik, Grenov, Benedikte & Nielsen, Dennis Sandris, 2020, In: Gut Microbes. 11, 4, p. 855-867 13 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  96. Published

    Extraction and purification of viruses from fecal samples for metagenome and morphology analyses

    Castro-Mejía, J. L., Deng, Ling, Vogensen, Finn Kvist, Reyes, A. & Nielsen, Dennis Sandris, 2018, The Human Virome: Methods and Protocols. Moya, A. & Brocal, V. P. (eds.). Humana Press, p. 49-57 9 p. (Methods in Molecular Biology, Vol. 1838).

    Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review

  97. Published

    Gut Microbiome and Its Cofactors Are Linked to Lipoprotein Distribution Profiles

    Castro-Mejía, J. L., Khakimov, Bekzod, Aru, Violetta, Lind, M. V., Garne, E., Paulová, P., Tavakkoli, E., Hansen, Lars Hestbjerg, Smilde, Age Klaas, Holm, L., Engelsen, Søren Balling & Nielsen, Dennis Sandris, 2022, In: Microorganisms. 10, 11, 2156.

    Research output: Contribution to journal › Journal article › Research › peer-review

  98. Published

    Impact of botanical fermented foods on metabolic biomarkers and gut microbiota in adults with metabolic syndrome and type 2 diabetes: a systematic review protocol

    Chan, M., Baxter, H., Larsen, Nadja, Jespersen, Lene, Ekinci, E. I. & Howell, K., 2019, In: BMJ Open. 9, 7, 5 p., e029242.

    Research output: Contribution to journal › Review › Research › peer-review

  99. E-pub ahead of print

    The impact of botanical fermented foods on metabolic syndrome and type 2 diabetes: a systematic review of randomised controlled trials

    Chan, M., Larsen, Nadja, Baxter, H., Jespersen, Lene, Ekinci, E. I. & Howell, K., 2024, (E-pub ahead of print) In: Nutrition Research Reviews.

    Research output: Contribution to journal › Review › Research › peer-review

  100. Published

    High-throughput Amplicon Sequencing of Gut Microbiome Sea Cucumber in Pahang, Malaysia

    Choo, M. Y., Yusof, M. F., Kamal, S. S., Nielsen, Dennis Sandris & Ahmad, H. F., 2023, 3rd Symposium on Industrial Science and Technology, SISTEC 2021. Salim, N., Samah, N. A., Nazlan, R., Widia, M. & Sukadarin, E. H. (eds.). American Institute of Physics, 050009. (AIP Conference Proceedings, Vol. 2682).

    Research output: Chapter in Book/Report/Conference proceeding › Article in proceedings › Research › peer-review

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