Ling Deng

Ling Deng

Associate Professor

Member of:

    ORCID: 0000-0002-2190-9788

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    1. Published

      Escherichia coli CRISPR arrays from early life fecal samples preferentially target prophages

      Dion, M. B., Shah, S. A., Deng, Ling, Thorsen, Jonathan Jan Ilve, Stokholm, Jakob, Krogfelt, K. A., Schjørring, S., Horvath, P., Allard, A., Nielsen, Dennis Sandris, Petit, M. A. & Moineau, S., 2024, In: The ISME Journal. 18, 1, 9 p., wrae005.

      Research output: Contribution to journal › Journal article › Research › peer-review

    2. Published

      A Protocol for Extraction of Infective Viromes Suitable for Metagenomics Sequencing from Low Volume Fecal Samples

      Deng, Ling, Silins, R., Castro-Mejia, J. L., Kot, W., Jessen, L., Thorsen, J., Shah, S., Stokholm, Jakob, Bisgaard, H., Moineau, S. & Nielsen, Dennis Sandris, 2019, In: Viruses. 11, 7, 10 p., 667.

      Research output: Contribution to journal › Journal article › Research › peer-review

    3. Published

      A novel interference mechanism by a type IIIB CRISPR-Cmr module in Sulfolobus

      Deng, Ling, Garrett, Roger Antony, Shah, S. A., Peng, Xu & She, Q., 2013, In: Molecular Microbiology. 87, 5, p. 1088-1099 12 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    4. Published

      A novel single-tailed fusiform Sulfolobus virus STSV2 infecting model Sulfolobus species

      Erdmann, S., Chen, B., Huang, X., Deng, Ling, Liu, C., Shah, S. A., Bauer, S. L. M., León Sobrino, C., Wang, H., Wei, Y., She, Q., Garrett, Roger Antony, Huang, L. & Lin, L., 2014, In: Extremophiles. 18, 1, p. 51-60 10 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    5. Published

      A seed motif for target RNA capture enables efficient immune defence by a type III-B CRISPR-Cas system

      Pan, S., Li, Q., Deng, Ling, Jiang, S., Jin, X., Peng, N., Liang, Y., She, Q. & Li, Y., 2019, In: RNA Biology. 16, 9, p. 1166-1178

      Research output: Contribution to journal › Journal article › Research › peer-review

    6. Published

      A synthetic arabinose-inducible promoter confers high levels of recombinant protein expression in hyperthermophilic archaeon Sulfolobus islandicus

      Peng, N., Deng, Ling, Mei, Y., Jiang, D., Hu, Y., Awayez, M., Liang, Y. & She, Q., 2012, In: Applied and Environmental Microbiology. 78, 16, p. 5630-5637 8 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    7. Published

      A type III-B CRISPR-Cas effector complex mediating massive target DNA destruction

      Han, W., Li, Y., Deng, Ling, Feng, M., Peng, W., Hallstrøm, S., Zhang, J., Peng, N., Liang, Y. X., White, M. F. & She, Q., 2017, In: Nucleic Acids Research. 45, 4, p. 1983–1993 11 p., gkw1274.

      Research output: Contribution to journal › Journal article › Research › peer-review

    8. Published

      Bacteriophage-mediated manipulation of the gut microbiome - promises and presents limitations

      Rasmussen, Torben Sølbeck, Koefoed, A. K., Jakobsen, Rasmus Riemer, Deng, Ling, Castro-Mejía, J. L., Brunse, Anders, Neve, H., Vogensen, Finn Kvist & Nielsen, Dennis Sandris, 2020, In: FEMS Microbiology Reviews. 44, 4, p. 507-521 15 p.

      Research output: Contribution to journal › Review › Research › peer-review

    9. Published

      CRISPR-Cas adaptive immune systems of the sulfolobales: unravelling their complexity and diversity

      Garrett, Roger Antony, Shah, S. A., Erdmann, S., Guannan, L., Mousaei, M., León Sobrino, C., Peng, W., Islin, S. R., Deng, Ling, Vestergaard, G., Peng, Xu & She, Q., 2015, In: Life. 5, 1, p. 783-817 35 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    10. Published

      CRISPR-Cas provides limited phage immunity to a prevalent gut bacterium in gnotobiotic mice

      Rasmussen, Torben Sølbeck, Koefoed, A. K., Deng, Ling, Muhammed, Musemma Kedir, Rousseau, G. M., Kot, Witold, Sprotte, S., Neve, H., Franz, C. M. A. P., Hansen, Axel Kornerup, Vogensen, Finn Kvist, Moineau, S. & Nielsen, Dennis Sandris, 2023, In: ISME Journal. 17, p. 432–442

      Research output: Contribution to journal › Journal article › Research › peer-review

    11. Published

      CRISPR-based immune systems of the Sulfolobales: complexity and diversity

      Garrett, Roger Antony, Shah, S. A., Vestergaard, G. A., Deng, Ling, Guðbergsdóttir, S. R., Kenchappa, C. S., Erdmann, S. & She, Q., 2011, In: Biochemical Society Transactions. 39, 1, p. 51-57 7 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    12. Published

      Cesarean section induced dysbiosis promotes type 2 immunity but not oxazolone-induced dermatitis in mice

      Zachariassen, L. F., Ebert, M. B. B., Mentzel, Caroline M. Junker, Deng, Ling, Krych, Lukasz, Nielsen, Dennis Sandris, Stokholm, Jakob & Hansen, Camilla Hartmann Friis, 2023, In: Gut Microbes. 15, 2, 15 p., 2271151.

      Research output: Contribution to journal › Journal article › Research › peer-review

    13. Published

      Characterization of the Vaginal DNA Virome in Health and Dysbiosis

      Jakobsen, Rasmus Riemer, Haahr, T., Humaidan, P., Jensen, J. S., Kot, Witold, Castro-Mejia, J. L., Deng, Ling, Leser, T. D. & Nielsen, Dennis Sandris, 2020, In: Viruses. 12, 10, 13 p., 1143.

      Research output: Contribution to journal › Journal article › Research › peer-review

    14. Published

      Choice of Ultrafilter Affects Recovery Rate of Bacteriophages

      Larsen, Frej Andreas Nøhr, Offersen, Simone Margaard, Li, V. R., Deng, Ling, Nielsen, Dennis Sandris & Rasmussen, Torben Sølbeck, 2023, In: Viruses. 15, 10, 12 p., 2051.

      Research output: Contribution to journal › Journal article › Research › peer-review

    15. Published

      Deletion of the topoisomerase III gene in the hyperthermophilic archaeon Sulfolobus islandicus results in slow growth and defects in cell cycle control

      Li, X., Guo, L., Deng, Ling, Feng, D., Ren, Y., Chu, Y., She, Q. & Huang, L., 2011, In: Journal of Genetics and Genomics. 38, 6, p. 253-9 7 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    16. Published

      Development of genetic systems for Sulfolobus and studies on its CRISPR DNA/RNA targeting systems.

      Deng, Ling, 2011

      Research output: Book/Report › Ph.D. thesis › Research

    17. Published

      Donor-dependent fecal microbiota transplantation efficacy against necrotizing enterocolitis in preterm pigs

      Hui, Y., Vestergaard, G., Deng, Ling, Kot, Witold, Thymann, Thomas, Brunse, Anders & Nielsen, Dennis Sandris, 2022, In: npj Biofilms and Microbiomes. 8, 1, 12 p., 48.

      Research output: Contribution to journal › Journal article › Research › peer-review

    18. Published

      Effect of gluten-free diet and antibiotics on murine gut microbiota and immune response to tetanus vaccination

      Kihl, Pernille, Krych, Lukasz, Deng, Ling, Hansen, Lars Hestbjerg, Buschard, K., Skov, Søren, Nielsen, Dennis Sandris & Hansen, Axel Kornerup, 2022, In: Plos One. 17, 4, 21 p., e0266719.

      Research output: Contribution to journal › Journal article › Research › peer-review

    19. Published

      Enteral broad-spectrum antibiotics antagonize the effect of fecal microbiota transplantation in preterm pigs

      Brunse, Anders, Offersen, Simone Margaard, Mosegaard, J. J., Deng, Ling, Damborg, Peter Panduro, Nielsen, Dennis Sandris, Sangild, Per Torp, Thymann, Thomas & Nguyen, Duc Ninh, 2021, In: Gut Microbes. 13, 1, p. 1-16 16 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    20. Published

      Erratum: Formation of a viral replication focus in Sulfolobus cells infected by the rudivirus Sulfolobus islandicus rod-shaped virus 2 [Journal of Virology, 91, 13, (2017), (e00486-17)] DOI:10.1128/JVI.00486-17

      Martinez Alvarez, Laura, Deng, Ling & Peng, Xu, 1 Apr 2018, In: Journal of Virology. 92, 7, e01991-17.

      Research output: Contribution to journal › Comment/debate › Research › peer-review

    21. Published

      Expanding known viral diversity in the healthy infant gut

      Shah, S. A., Deng, L., Thorsen, J., Pedersen, A. G., Dion, M. B., Castro-Mejía, J. L., Silins, R., Romme, F. O., Sausset, R., Jessen, L. E., Ndela, E. O., Hjelmsø, M., Rasmussen, M. A., Redgwell, T. A., Rodríguez, C. L., Vestergaard, G., Zhang, Y., Chawes, B., Bønnelykke, K., Sørensen, S. J. & 6 others, Bisgaard, H., Enault, F., Stokholm, Jakob, Moineau, S., Petit, M. A. & Nielsen, Dennis Sandris, 2023, In: Nature Microbiology. 8, p. 986–998

      Research output: Contribution to journal › Journal article › Research › peer-review

    22. Published

      Extraction and purification of viruses from fecal samples for metagenome and morphology analyses

      Castro-Mejía, J. L., Deng, Ling, Vogensen, Finn Kvist, Reyes, A. & Nielsen, Dennis Sandris, 2018, The Human Virome: Methods and Protocols. Moya, A. & Brocal, V. P. (eds.). Humana Press, p. 49-57 9 p. (Methods in Molecular Biology, Vol. 1838).

      Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review

    23. Published

      Fecal filtrate transplantation protects against necrotizing enterocolitis

      Brunse, Anders, Deng, Ling, Pan, X., Hui, Y., Castro Mejia, J. L., Kot, Witold, Nguyen, Duc Ninh, Secher, Jan Bojsen-Møller, Nielsen, Dennis Sandris & Thymann, Thomas, 2022, In: The ISME Journal. 16, p. 686–694

      Research output: Contribution to journal › Journal article › Research › peer-review

    24. Published

      Formation of a viral replication focus in Sulfolobus cells infected by the rudivirus Sulfolobus islandicus rod-shaped virus 2

      Martinez Alvarez, Laura, Deng, Ling & Peng, Xu, Jul 2017, In: Journal of Virology. 91, 13, 12 p., e00486-17.

      Research output: Contribution to journal › Journal article › Research › peer-review

    25. Published

      Genome binning of viral entities from bulk metagenomics data

      Johansen, Joachim, Plichta, D. R., Nissen, J. N., Jespersen, Marie Louise, Shah, S. A., Deng, Ling, Stokholm, Jakob, Bisgaard, H., Nielsen, Dennis Sandris, Sørensen, Søren Johannes & Rasmussen, Simon, 2022, In: Nature Communications. 13, 12 p., 965.

      Research output: Contribution to journal › Journal article › Research › peer-review

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