Ling Deng

Ling Deng

Associate Professor

Member of:

    ORCID: 0000-0002-2190-9788

    Publication year:
    All
    1 - 34 out of 34Page size: 100
    1. 2024
    2. Published

      Escherichia coli CRISPR arrays from early life fecal samples preferentially target prophages

      Dion, M. B., Shah, S. A., Deng, Ling, Thorsen, Jonathan Jan Ilve, Stokholm, Jakob, Krogfelt, K. A., Schjørring, S., Horvath, P., Allard, A., Nielsen, Dennis Sandris, Petit, M. A. & Moineau, S., 2024, In: The ISME Journal. 18, 1, 9 p., wrae005.

      Research output: Contribution to journal › Journal article › Research › peer-review

    3. 2023
    4. Published

      CRISPR-Cas provides limited phage immunity to a prevalent gut bacterium in gnotobiotic mice

      Rasmussen, Torben Sølbeck, Koefoed, A. K., Deng, Ling, Muhammed, Musemma Kedir, Rousseau, G. M., Kot, Witold, Sprotte, S., Neve, H., Franz, C. M. A. P., Hansen, Axel Kornerup, Vogensen, Finn Kvist, Moineau, S. & Nielsen, Dennis Sandris, 2023, In: ISME Journal. 17, p. 432–442

      Research output: Contribution to journal › Journal article › Research › peer-review

    5. Published

      Cesarean section induced dysbiosis promotes type 2 immunity but not oxazolone-induced dermatitis in mice

      Zachariassen, L. F., Ebert, M. B. B., Mentzel, Caroline M. Junker, Deng, Ling, Krych, Lukasz, Nielsen, Dennis Sandris, Stokholm, Jakob & Hansen, Camilla Hartmann Friis, 2023, In: Gut Microbes. 15, 2, 15 p., 2271151.

      Research output: Contribution to journal › Journal article › Research › peer-review

    6. Published

      Choice of Ultrafilter Affects Recovery Rate of Bacteriophages

      Larsen, Frej Andreas Nøhr, Offersen, Simone Margaard, Li, V. R., Deng, Ling, Nielsen, Dennis Sandris & Rasmussen, Torben Sølbeck, 2023, In: Viruses. 15, 10, 12 p., 2051.

      Research output: Contribution to journal › Journal article › Research › peer-review

    7. Published

      Expanding known viral diversity in the healthy infant gut

      Shah, S. A., Deng, L., Thorsen, J., Pedersen, A. G., Dion, M. B., Castro-Mejía, J. L., Silins, R., Romme, F. O., Sausset, R., Jessen, L. E., Ndela, E. O., Hjelmsø, M., Rasmussen, M. A., Redgwell, T. A., Rodríguez, C. L., Vestergaard, G., Zhang, Y., Chawes, B., Bønnelykke, K., Sørensen, S. J. & 6 others, Bisgaard, H., Enault, F., Stokholm, Jakob, Moineau, S., Petit, M. A. & Nielsen, Dennis Sandris, 2023, In: Nature Microbiology. 8, p. 986–998

      Research output: Contribution to journal › Journal article › Research › peer-review

    8. Published

      Replication Protein Rep Provides Selective Advantage to Viruses in the Presence of CRISPR-Cas Immunity

      Zhang, W., Bhoobalan-Chitty, Y., Zhai, Xichuan, Hui, Y., Hansen, Lars Hestbjerg, Deng, Ling & Peng, Xu, 2023, In: CRISPR Journal. 6, 1, p. 32-42

      Research output: Contribution to journal › Journal article › Research › peer-review

    9. Published

      The impact of storage buffer and storage conditions on fecal samples for bacteriophage infectivity and metavirome analyses

      Zhai, Xichuan, Castro-Mejía, J. L., Gobbi, Alex, Aslampaloglou, A., Kot, Witold, Nielsen, Dennis Sandris & Deng, Ling, 2023, In: Microbiome. 11, 12 p., 193.

      Research output: Contribution to journal › Journal article › Research › peer-review

    10. Published

      The infant gut virome is associated with preschool asthma risk independently of bacteria

      Rodríguez, C. L., Shah, S. A., Rasmussen, Morten Arendt, Thorsen, J., Boulund, U., Pedersen, C. T., Castro-Mejía, J. L., Poulsen, Christina Egeø, Poulsen, C. S., Deng, Ling, Larsen, Frej Andreas Nøhr, Widdowson, Michael Lawrence, Zhang, Yichang, Sørensen, Søren Johannes, Moineau, S., Petit, M. A., Chawes, Bo Lund Krogsgaard, Bønnelykke, Klaus, Nielsen, Dennis Sandris & Stokholm, Jakob, 2023, In: Nature Medicine. 30, p. 138-148 11 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    11. 2022
    12. Published

      Donor-dependent fecal microbiota transplantation efficacy against necrotizing enterocolitis in preterm pigs

      Hui, Y., Vestergaard, G., Deng, Ling, Kot, Witold, Thymann, Thomas, Brunse, Anders & Nielsen, Dennis Sandris, 2022, In: npj Biofilms and Microbiomes. 8, 1, 12 p., 48.

      Research output: Contribution to journal › Journal article › Research › peer-review

    13. Published

      Effect of gluten-free diet and antibiotics on murine gut microbiota and immune response to tetanus vaccination

      Kihl, Pernille, Krych, Lukasz, Deng, Ling, Hansen, Lars Hestbjerg, Buschard, K., Skov, Søren, Nielsen, Dennis Sandris & Hansen, Axel Kornerup, 2022, In: Plos One. 17, 4, 21 p., e0266719.

      Research output: Contribution to journal › Journal article › Research › peer-review

    14. Published

      Fecal filtrate transplantation protects against necrotizing enterocolitis

      Brunse, Anders, Deng, Ling, Pan, X., Hui, Y., Castro Mejia, J. L., Kot, Witold, Nguyen, Duc Ninh, Secher, Jan Bojsen-Møller, Nielsen, Dennis Sandris & Thymann, Thomas, 2022, In: The ISME Journal. 16, p. 686–694

      Research output: Contribution to journal › Journal article › Research › peer-review

    15. Published

      Genome binning of viral entities from bulk metagenomics data

      Johansen, Joachim, Plichta, D. R., Nissen, J. N., Jespersen, Marie Louise, Shah, S. A., Deng, Ling, Stokholm, Jakob, Bisgaard, H., Nielsen, Dennis Sandris, Sørensen, Søren Johannes & Rasmussen, Simon, 2022, In: Nature Communications. 13, 12 p., 965.

      Research output: Contribution to journal › Journal article › Research › peer-review

    16. 2021
    17. Published

      Enteral broad-spectrum antibiotics antagonize the effect of fecal microbiota transplantation in preterm pigs

      Brunse, Anders, Offersen, Simone Margaard, Mosegaard, J. J., Deng, Ling, Damborg, Peter Panduro, Nielsen, Dennis Sandris, Sangild, Per Torp, Thymann, Thomas & Nguyen, Duc Ninh, 2021, In: Gut Microbes. 13, 1, p. 1-16 16 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    18. 2020
    19. Published

      Bacteriophage-mediated manipulation of the gut microbiome - promises and presents limitations

      Rasmussen, Torben Sølbeck, Koefoed, A. K., Jakobsen, Rasmus Riemer, Deng, Ling, Castro-Mejía, J. L., Brunse, Anders, Neve, H., Vogensen, Finn Kvist & Nielsen, Dennis Sandris, 2020, In: FEMS Microbiology Reviews. 44, 4, p. 507-521 15 p.

      Research output: Contribution to journal › Review › Research › peer-review

    20. Published

      Characterization of the Vaginal DNA Virome in Health and Dysbiosis

      Jakobsen, Rasmus Riemer, Haahr, T., Humaidan, P., Jensen, J. S., Kot, Witold, Castro-Mejia, J. L., Deng, Ling, Leser, T. D. & Nielsen, Dennis Sandris, 2020, In: Viruses. 12, 10, 13 p., 1143.

      Research output: Contribution to journal › Journal article › Research › peer-review

    21. Published

      Virulent coliphages in 1-year-old children fecal samples are fewer, but more infectious than temperate coliphages

      Mathieu, A., Dion, M., Deng, Ling, Tremblay, D., Moncaut, E., Shah, S. A., Stokholm, Jakob, Krogfelt, K. A., Schjørring, S., Bisgaard, H., Nielsen, Dennis Sandris, Moineau, S. & Petit, M., 2020, In: Nature Communications. 11, 12 p., 378.

      Research output: Contribution to journal › Journal article › Research › peer-review

    22. 2019
    23. Published

      A Protocol for Extraction of Infective Viromes Suitable for Metagenomics Sequencing from Low Volume Fecal Samples

      Deng, Ling, Silins, R., Castro-Mejia, J. L., Kot, W., Jessen, L., Thorsen, J., Shah, S., Stokholm, Jakob, Bisgaard, H., Moineau, S. & Nielsen, Dennis Sandris, 2019, In: Viruses. 11, 7, 10 p., 667.

      Research output: Contribution to journal › Journal article › Research › peer-review

    24. Published

      A seed motif for target RNA capture enables efficient immune defence by a type III-B CRISPR-Cas system

      Pan, S., Li, Q., Deng, Ling, Jiang, S., Jin, X., Peng, N., Liang, Y., She, Q. & Li, Y., 2019, In: RNA Biology. 16, 9, p. 1166-1178

      Research output: Contribution to journal › Journal article › Research › peer-review

    25. Published

      Oral LPS Dosing Induces Local Immunological Changes in the Pancreatic Lymph Nodes in Mice

      Kihl, Pernille, Krych, Lukasz, Deng, Ling, Kildemoes, A. O., Laigaard, A., Hansen, L. H., Hansen, Camilla Hartmann Friis, Buschard, K., Nielsen, Dennis Sandris & Hansen, Axel Kornerup, 2019, In: Journal of Diabetes Research. 2019, 9 p., 1649279.

      Research output: Contribution to journal › Journal article › Research › peer-review

    26. 2018
    27. Published

      Erratum: Formation of a viral replication focus in Sulfolobus cells infected by the rudivirus Sulfolobus islandicus rod-shaped virus 2 [Journal of Virology, 91, 13, (2017), (e00486-17)] DOI:10.1128/JVI.00486-17

      Martinez Alvarez, Laura, Deng, Ling & Peng, Xu, 1 Apr 2018, In: Journal of Virology. 92, 7, e01991-17.

      Research output: Contribution to journal › Comment/debate › Research › peer-review

    28. Published

      Extraction and purification of viruses from fecal samples for metagenome and morphology analyses

      Castro-Mejía, J. L., Deng, Ling, Vogensen, Finn Kvist, Reyes, A. & Nielsen, Dennis Sandris, 2018, The Human Virome: Methods and Protocols. Moya, A. & Brocal, V. P. (eds.). Humana Press, p. 49-57 9 p. (Methods in Molecular Biology, Vol. 1838).

      Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review

    29. 2017
    30. Published

      Formation of a viral replication focus in Sulfolobus cells infected by the rudivirus Sulfolobus islandicus rod-shaped virus 2

      Martinez Alvarez, Laura, Deng, Ling & Peng, Xu, Jul 2017, In: Journal of Virology. 91, 13, 12 p., e00486-17.

      Research output: Contribution to journal › Journal article › Research › peer-review

    31. Published

      A type III-B CRISPR-Cas effector complex mediating massive target DNA destruction

      Han, W., Li, Y., Deng, Ling, Feng, M., Peng, W., Hallstrøm, S., Zhang, J., Peng, N., Liang, Y. X., White, M. F. & She, Q., 2017, In: Nucleic Acids Research. 45, 4, p. 1983–1993 11 p., gkw1274.

      Research output: Contribution to journal › Journal article › Research › peer-review

    32. 2016
    33. Published

      Major and minor crRNA annealing sites facilitate low stringency DNA protospacer binding prior to Type I-A CRISPR-Cas interference in Sulfolobus

      Mousaei, M., Deng, Ling, She, Q. & Garrett, Roger Antony, 2016, In: R N A Biology. 13, 11, p. 1166-1173 8 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    34. 2015
    35. Published

      CRISPR-Cas adaptive immune systems of the sulfolobales: unravelling their complexity and diversity

      Garrett, Roger Antony, Shah, S. A., Erdmann, S., Guannan, L., Mousaei, M., León Sobrino, C., Peng, W., Islin, S. R., Deng, Ling, Vestergaard, G., Peng, Xu & She, Q., 2015, In: Life. 5, 1, p. 783-817 35 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    36. 2014
    37. Published

      A novel single-tailed fusiform Sulfolobus virus STSV2 infecting model Sulfolobus species

      Erdmann, S., Chen, B., Huang, X., Deng, Ling, Liu, C., Shah, S. A., Bauer, S. L. M., León Sobrino, C., Wang, H., Wei, Y., She, Q., Garrett, Roger Antony, Huang, L. & Lin, L., 2014, In: Extremophiles. 18, 1, p. 51-60 10 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    38. Published

      Unveiling cell surface and type IV secretion proteins responsible for archaeal rudivirus entry

      Deng, Ling, He, F., Bhoobalan, Yuvaraj, Martinez Alvarez, Laura, Guo, Y. & Peng, Xu, 2014, In: Journal of Virology. 88, 17, p. 10264-10268 5 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    39. 2013
    40. Published

      A novel interference mechanism by a type IIIB CRISPR-Cmr module in Sulfolobus

      Deng, Ling, Garrett, Roger Antony, Shah, S. A., Peng, Xu & She, Q., 2013, In: Molecular Microbiology. 87, 5, p. 1088-1099 12 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    41. Published

      Novel insights into gene regulation of the rudivirus SIRV2 infecting Sulfolobus cells

      Okutan, E., Deng, Ling, Mirlashari, S., Uldahl, K., Halim, M., Liu, C., Garrett, Roger Antony, She, Q. & Peng, Xu, 2013, In: R N A Biology. 10, 5, p. 1-11 11 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    42. 2012
    43. Published

      A synthetic arabinose-inducible promoter confers high levels of recombinant protein expression in hyperthermophilic archaeon Sulfolobus islandicus

      Peng, N., Deng, Ling, Mei, Y., Jiang, D., Hu, Y., Awayez, M., Liang, Y. & She, Q., 2012, In: Applied and Environmental Microbiology. 78, 16, p. 5630-5637 8 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    44. Published

      Modulation of CRISPR locus transcription by the repeat-binding protein Cbp1 in Sulfolobus

      Deng, Ling, Kenchappa, C. S., Peng, Xu, She, Q. & Garrett, Roger Antony, 2012, In: Nucleic Acids Research. 40, 6, p. 2470-2480 11 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    45. 2011
    46. Published

      CRISPR-based immune systems of the Sulfolobales: complexity and diversity

      Garrett, Roger Antony, Shah, S. A., Vestergaard, G. A., Deng, Ling, Guðbergsdóttir, S. R., Kenchappa, C. S., Erdmann, S. & She, Q., 2011, In: Biochemical Society Transactions. 39, 1, p. 51-57 7 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    47. Published

      Deletion of the topoisomerase III gene in the hyperthermophilic archaeon Sulfolobus islandicus results in slow growth and defects in cell cycle control

      Li, X., Guo, L., Deng, Ling, Feng, D., Ren, Y., Chu, Y., She, Q. & Huang, L., 2011, In: Journal of Genetics and Genomics. 38, 6, p. 253-9 7 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    48. Published

      Development of genetic systems for Sulfolobus and studies on its CRISPR DNA/RNA targeting systems.

      Deng, Ling, 2011

      Research output: Book/Report › Ph.D. thesis › Research

    ID: 33281215