Microbiology and Fermentation

  1. 2020
  2. Accepted/In press

    Faecal virome transplantation decreases symptoms of type 2 diabetes and obesity in a murine model

    Rasmussen, Torben Sølbeck, Mentzel, Caroline M. Junker, Kot, Witold, Castro Mejia, Josue Leonardo, Zuffa, S., Swann, J. R., Hansen, Lars Hestbjerg, Vogensen, Finn Kvist, Hansen, Axel Kornerup & Nielsen, Dennis Sandris, 1 Jan 2020, (Accepted/In press) In : Gut. 9 p., 320005.

    Research output: Contribution to journalJournal articleResearchpeer-review

  3. Accepted/In press

    Gastrointestinal toxicity during induction treatment for childhood acute lymphoblastic leukemia: the impact of the gut microbiota

    De Pietri, S., Ingham, A. C., Frandsen, T. L., Rathe, M., Krych, Lukasz, Castro Mejia, Josue Leonardo, Nielsen, Dennis Sandris, Nersting, J., Wehner, P. S., Schmiegelow, Kjeld, Hasle, H., Pamp, S. J. & Muller, Klaus, 1 Jan 2020, (Accepted/In press) In : International Journal of Cancer. 10 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  4. Accepted/In press

    The quorum-sensing molecule 2-phenylethanol impaired conidial germination, hyphal membrane integrity and growth of Penicillium expansum and Penicillium nordicum

    Huang, Chuchu, Qian, Y., Viana, T., Siegumfeldt, Henrik, Arneborg, Nils, Larsen, N. & Jespersen, Lene, 1 Jan 2020, (Accepted/In press) In : Journal of Applied Microbiology.

    Research output: Contribution to journalJournal articleResearchpeer-review

  5. Published

    Lactobacillus rhamnosus GG Genomic and Phenotypic Stability in an Industrial Production Process

    Strickertsson, Marianne Stage, Wichmann, A., Jørgensen, M., Vera-Jimenéz, N. I., Wielje, M., Nielsen, Dennis Sandris, Sandelin, Albin Gustav, Chen, Y. & Baker, A., 2020, In : Applied and Environmental Microbiology. 86, 6, 15 p., e02780-19.

    Research output: Contribution to journalJournal articleResearchpeer-review

  6. Published

    Oenococcus oeni, a species born and moulded in wine: a critical review of the stress impacts of wine and the physiological responses

    Bech-Terkilsen, Sebastian, Westman, J. O., Swiegers, J. H. & Siegumfeldt, Henrik, 2020, In : Australian Journal of Grape and Wine Research. 26, 3, p. 188-206

    Research output: Contribution to journalReviewResearchpeer-review

  7. Published

    A Humanized Diet Profile May Facilitate Colonization and Immune Stimulation in Human Microbiota-Colonized Mice

    Moreno-Indias, I., Lundberg, R., Krych, Lukasz, Metzdorff, S. B., Kot, Witold, Sørensen, Dorte Bratbo, Nielsen, Dennis Sandris, Hansen, Camilla Hartmann Friis & Hansen, Axel Kornerup, 2020, In : Frontiers in Microbiology. 11, 15 p., 1336.

    Research output: Contribution to journalJournal articleResearchpeer-review

  8. Published

    A chromatographic approach to understanding the plasmin-plasminogen system in acid whey

    Nurup, Casper Normann, Czárán, T. L. & Rattray, Fergal Patrick, 2020, In : International Dairy Journal. 106, 7 p., 104705.

    Research output: Contribution to journalJournal articleResearchpeer-review

  9. Published

    Alpha-Lactalbumin Enriched Whey Protein Concentrate to Improve Gut, Immunity and Brain Development in Preterm Pigs

    Nielsen, Charlotte Holme, Hui, Yan, Nguyen, Duc Ninh, Ahnfeldt, Agnethe May, Burrin, D. G., Hartmann, Bolette, Heckmann, A. B., Sangild, Per Torp, Thymann, Thomas & Bering, Stine Brandt, 2020, In : Nutrients. 12, 1, 20 p., 245.

    Research output: Contribution to journalJournal articleResearchpeer-review

  10. Published

    Bacterial flow cytometry and imaging as potential process monitoring tools for industrial biotechnology

    Kadamalakunte Narayana, S., Mallick, S., Siegumfeldt, Henrik & van der Berg, Franciscus Winfried J, 2020, In : Fermentation. 6, 1, 15 p., 10.

    Research output: Contribution to journalJournal articleResearchpeer-review

  11. Published

    Bacteriophages – A key component in shaping a healthy gut microbiome

    Rasmussen, Torben Sølbeck, 2020, Department of Food Science, Faculty of Science, University of Copenhagen. 221 p.

    Research output: Book/ReportPh.D. thesisResearch

  12. Published
  13. Published

    Dietary Inulin and Trichuris suis Infection Promote Beneficial Bacteria Throughout the Porcine Gut

    Stolzenbach, S., Myhill, Laura Jessica, Andersen, L. O., Krych, Lukasz, Mejer, Helena, Williams, Andrew Richard, Nejsum, P., Stensvold, C. R., Nielsen, Dennis Sandris & Thamsborg, Stig Milan, 2020, In : Frontiers in Microbiology. 11, 15 p., 312.

    Research output: Contribution to journalJournal articleResearchpeer-review

  14. Published

    Diversity in NaCl tolerance of Lactococcus lactis strains from DL-starter cultures for production of semi-hard cheeses

    Kristensen, L. S., Siegumfeldt, Henrik, Larsen, N. & Jespersen, Lene, 2020, In : International Dairy Journal. 105, 5 p., 104673.

    Research output: Contribution to journalJournal articleResearchpeer-review

  15. Published

    Fast measurement of phosphates and ammonium in fermentation-like media: A feasibility study

    Pontius, K., Praticò, G., Larsen, F. H., Skov, T., Arneborg, Nils, Lantz, A. E. & Bevilacqua, Marta, 2020, In : New Biotechnology. 56, p. 54-62 9 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  16. Published

    Fermentable Dietary Fiber Promotes Helminth Infection and Exacerbates Host Inflammatory Responses

    Myhill, Laura Jessica, Stolzenbach, S., Mejer, Helena, Jakobsen, S. R., Hansen, T. V. A., Andersen, D., Brix, S., Hansen, Lars Hestbjerg, Krych, Lukasz, Nielsen, Dennis Sandris, Nejsum, P., Thamsborg, Stig Milan & Williams, Andrew Richard, 2020, In : The Journal of Immunology. 204, 11, p. 3042-3055 14 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  17. Published

    Gut microbiota mediates intermittent-fasting alleviation of diabetes-induced cognitive impairment

    Liu, Z., Dai, X., Zhang, H., Shi, R., Hui, Yan, Jin, X., Zhang, W., Wang, L., Wang, Q., Wang, D., Wang, J., Tan, X., Ren, B., Liu, X., Zhao, T., Wang, J., Pan, J., Yuan, T., Chu, C., Lan, L., Yin, F., Cadenas, E., Shi, L., Zhao, S. & Liu, X., 2020, In : Nature Communications. 11, 14 p., 855.

    Research output: Contribution to journalJournal articleResearchpeer-review

  18. Published

    Histamine forming behaviour of bacterial isolates from aged cheese

    Møller, Cleide Oliveira de Almeida, Üçok, Elif Fatma & Rattray, Fergal Patrick, 2020, In : Food Research International. 128, 10 p., 108719.

    Research output: Contribution to journalJournal articleResearchpeer-review

  19. Published

    Housing temperature influences exercise training adaptations in mice

    Raun, Steffen Henning, Henriquez Olguín, Carlos, Karavaeva, Iuliia, Ali, Mona Sadek, Møller, Lisbeth L V, Kot, Witold, Castro Mejia, Josue Leonardo, Nielsen, Dennis Sandris, Gerhart-Hines, Z., Richter, Erik A. & Sylow, Lykke, 2020, In : Nature Communications. 11, 16 p., 1560.

    Research output: Contribution to journalJournal articleResearchpeer-review

  20. Published

    Impact of Dietary Supplementation of Lactic Acid Bacteria Fermented Rapeseed with or without Macroalgae on Performance and Health of Piglets Following Omission of Medicinal Zinc from Weaner Diets

    Satessa, Gizaw Dabessa, Tamez-Hidalgo , P., Hui, Yan, Cieplak, T., Krych, Lukasz, Kjærulff , S., Brunsgaard , G., Nielsen, Dennis Sandris & Nielsen, M. O., 2020, In : Animals. 10, 1, 137.

    Research output: Contribution to journalJournal articleResearchpeer-review

  21. Published

    Inactivation of salmonella strains in acidified broth and raw egg yolk as a function of pH and acid type

    Nielsen, Line & Knøchel, Susanne, 2020, In : Food Microbiology. 92, 103574.

    Research output: Contribution to journalJournal articleResearchpeer-review

  22. Published

    Inulin and milk mineral fortification of a pork sausage exhibits distinct effects on the microbiome and biochemical activity in the gut of healthy rats

    Thøgersen, R., Castro Mejia, Josue Leonardo, Sundekilde, U. K., Hansen, Lars Hestbjerg, Gray, N., Kuhnle, G., Jørgensen, Niklas Rye, Hansen, Axel Kornerup, Nielsen, Dennis Sandris & Bertram, H. C., 2020, In : Food Chemistry. 331, 10 p., 127291.

    Research output: Contribution to journalJournal articleResearchpeer-review

  23. Published

    Metabolic Effects of Bovine Milk Oligosaccharides on Selected Commensals of the Infant Microbiome - Commensalism and Postbiotic Effects

    Jakobsen, L. M. A., Maldonado-Gómez, M. X., Sundekilde, U. K., Andersen, H. J., Nielsen, Dennis Sandris & Bertram, H. C., 2020, In : Metabolites. 10, 4, 13 p., 167.

    Research output: Contribution to journalJournal articleResearchpeer-review

  24. Published

    Microbial Safety of Milk Production and Fermented Dairy Products in Africa

    Owusu-Kwarteng, J., Akabanda, F., Agyei, D. & Jespersen, Lene, 2020, In : Microorganisms. 8, 5, 24 p., 752.

    Research output: Contribution to journalReviewResearchpeer-review

  25. Published

    Microbiota in foods from Inuit traditional hunting

    Hauptmann, A. L., Paulová, P., Hansen, Lars Hestbjerg, Sicheritz-Pontén, Thomas, Mulvad, G. & Nielsen, Dennis Sandris, 2020, In : PLoS ONE. 15, 1, 15 p., e0227819.

    Research output: Contribution to journalJournal articleResearchpeer-review

  26. Published

    Nutrient Restriction has Limited Short-Term Effects on Gut, Immunity, and Brain Development in Preterm Pigs

    Ahnfeldt, Agnethe May, Bæk, Ole, Hui, Yan, Nielsen, Charlotte Holme, Obelitz-Ryom, K., Busk-Anderson, T., Ruge, A., Holst, Jens Juul, Rudloff, S., Burrin, D., Nguyen, Duc Ninh, Nielsen, Dennis Sandris, Zachariassen, G., Bering, Stine Brandt, Thymann, Thomas & Sangild, Per Torp, 2020, In : The Journal of Nutrition. 150, 5, p. 1196-1207

    Research output: Contribution to journalJournal articleResearchpeer-review

  27. Published

    PREDOMINANCE OF BACILLUS SPP. DURING THE PRODUCTION OF MANTCHOUA, A TRADITIONAL KAPOK SEED FERMENTED CONDIMENT FROM BURKINA FASO

    Kere-Kando, C., Johansen, Pernille Greve, Compaoré, C. S., Sawadogo-Lingani, H., A.-Ouédraogo, G., Diawara, B., Thorsen, L. & Jespersen, Lene, 2020, In : Journal of Microbiology, Biotechnology and Food Sciences. 9, 5, p. 1009-1015

    Research output: Contribution to journalJournal articleResearchpeer-review

  28. Published
  29. Published

    Pretreatment Prevotella-to-Bacteroides ratio and salivary amylase gene copy number as prognostic markers for dietary weight loss

    Hjorth, Mads Fiil, Christensen, Lars, Larsen, T. M., Roager, Henrik Munch, Krych, Lukasz, Kot, Witold, Nielsen, Dennis Sandris, Ritz, Christian & Astrup, Arne, 2020, In : American Journal of Clinical Nutrition. 111, 5, p. 1079-1086 8 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  30. Published

    Restitution of gut microbiota in Ugandan children administered with probiotics (Lactobacillus rhamnosus GG and Bifidobacterium animalis subsp. lactis BB-12) during treatment for severe acute malnutrition

    Castro Mejia, Josue Leonardo, O’Ferrall, S., Krych, Lukasz, O’Mahony, E., Namusoke, H., Lanyero, B., Kot, Witold, Nabukeera-Barungi, N., Michaelsen, Kim F., Mølgaard, Christian, Friis, Henrik, Grenov, Benedikte & Nielsen, Dennis Sandris, 2020, In : Gut Microbes. 11, 4, p. 855-867 13 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  31. Published

    Starch/Poly(glycerol-adipate) Nanocomposites: A Novel Oral Drug Delivery Device

    Vestri, A., Pearce, A. K., Cavanagh, R., Styliari, I. D., Sanders, C., Couturaud, B., Schenone, S., Taresco, V., Jakobsen, Rasmus Riemer, Howdle, S. M., Musumeci, F. & Sagnelli, D., 2020, In : Coatings. 10, 2, 15 p., 125.

    Research output: Contribution to journalJournal articleResearchpeer-review

  32. Published

    Stress Tolerance of Yeasts Dominating Reverse Osmosis Membranes for Whey Water Treatment

    Vitzilaiou, Eirini, Aunsbjerg, S. D., Mahyudin, N. A. & Knøchel, Susanne, 2020, In : Frontiers in Microbiology. 11, 16 p., 816.

    Research output: Contribution to journalJournal articleResearchpeer-review

  33. Published

    Technological properties of indigenous Lactococcus lactis strains isolated from Lait caillé, a spontaneous fermented milk from Burkina Faso

    Bayili, G. R., Johansen, Pernille Greve, Hougaard, Anni Bygvrå, Diawara, B., Ouedraogo, G. A., Jespersen, Lene & Sawadogo-Lingani, H., 2020, In : Journal of Dairy Research. 87, 1, p. 110-116 7 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  34. Published

    The microbial composition of dried fish prepared according to Greenlandic Inuit traditions and industrial counterparts

    Hauptmann, A. L., Paulová, P., Castro Mejia, Josue Leonardo, Hansen, L. H., Sicheritz-Pontén, Thomas, Mulvad, G. & Nielsen, Dennis Sandris, 2020, In : Food Microbiology. 85, 11 p., 103305.

    Research output: Contribution to journalJournal articleResearchpeer-review

  35. Published

    Virulent coliphages in 1-year-old children fecal samples are fewer, but more infectious than temperate coliphages

    Mathieu, A., Dion, M., Deng, Ling, Tremblay, D., Moncaut, E., Shah, S. A., Stokholm, J., Krogfelt, K. A., Schjørring, S., Bisgaard, Hans, Nielsen, Dennis Sandris, Moineau, S. & Petit, M., 2020, In : Nature Communications. 11, 12 p., 378.

    Research output: Contribution to journalJournal articleResearchpeer-review

  36. 2019
  37. Published

    Proteomics insights into the responses of Saccharomyces cerevisiae during mixed-culture alcoholic fermentation with Lachancea thermotolerans

    Peng, C., Andersen, Birgit, Arshid, S., Larsen, M. R., Albergaria, H., Lametsch, Rene & Arneborg, Nils, 1 Sep 2019, In : FEMS Microbiology Ecology. 95, 9, p. 1-16 fiz126.

    Research output: Contribution to journalJournal articleResearchpeer-review

  38. Published

    Editorial: Microbial food and feed ingredients - reconciling tradition and novelty

    Hansen, E. B., Nielsen, Dennis Sandris & LaPointe, G., 1 Jun 2019, In : FEMS Microbiology Letters. 366, 11, 2 p., fnz130.

    Research output: Contribution to journalEditorialResearchpeer-review

  39. Published

    Prevotella abundance predicts weight loss success in healthy, overweight adults consuming a whole-grain diet ad libitum: A post hoc analysis of a 6-wk randomized controlled trial

    Christensen, Lars, Vuholm, S., Roager, Henrik Munch, Nielsen, Dennis Sandris, Krych, Lukasz, Kristensen, M. B., Astrup, Arne & Hjorth, Mads Fiil, 2019, In : Journal of Nutrition. 149, 12, p. 2174-2181 8 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  40. Published

    In vitro modulation of human gut microbiota composition and metabolites by Bifidobacterium longum BB-46 and a citric pectin

    Bianchi, F., Larsen, N., Tieghi, T. D. M., Adorno, M. A. T., Saad, S. M. I., Jespersen, Lene & Sivieri, K., 2019, In : Food Research International. 120, p. 595-602

    Research output: Contribution to journalJournal articleResearchpeer-review

  41. Published

    A Protocol for Extraction of Infective Viromes Suitable for Metagenomics Sequencing from Low Volume Fecal Samples

    Deng, Ling, Silins, R., Castro Mejia, Josue Leonardo, Kot, W., Jessen, L., Thorsen, J., Shah, S., Stokholm, J., Bisgaard, Hans, Moineau, S. & Nielsen, Dennis Sandris, 2019, In : Viruses. 11, 7, 10 p., 667.

    Research output: Contribution to journalJournal articleResearchpeer-review

  42. Published

    A comparative genomics approach for identifying host-range determinants in Streptococcus thermophilus bacteriophages

    Szymczak, P., Rau, M. H., Monteiro, J. M., Pinho, M. G., Filipe, S. R., Vogensen, Finn Kvist, Zeidan, A. A. & Janzen, T., 2019, In : Scientific Reports. 9, 14 p., 7991.

    Research output: Contribution to journalJournal articleResearchpeer-review

  43. Published

    ApoE-dependent protective effects of sesamol on high-fat diet-induced behavioral disorders: regulation of the microbiome-gut-brain axis

    Yuan, T., Chu, C., Shi, R., Cui, T., Zhang, X., Zhao, Y., Shi, X., Hui, Yan, Pan, J., Qian, R., Dai, X., Liu, Z. & Liu, X., 2019, In : Journal of Agricultural and Food Chemistry. 67, 22, p. 6190-6201

    Research output: Contribution to journalJournal articleResearchpeer-review

  44. Published

    Bacterial species to be considered in quality assurance of mice and rats

    Hansen, Axel Kornerup, Nielsen, Dennis Sandris, Krych, Lukasz & Hansen, Camilla Hartmann Friis, 2019, In : Laboratory Animals. 53, 3, p. 281-291

    Research output: Contribution to journalJournal articleResearchpeer-review

  45. Published

    Can community-based signalling behaviour in Saccharomyces cerevisiae be called quorum sensing? a critical review of the literature

    Winters, Michela, Arneborg, Nils, Appels, R. & Howell, K., 2019, In : FEMS Yeast Research. 19, 5, 11 p., foz046.

    Research output: Contribution to journalReviewResearchpeer-review

  46. Published

    Cesarean Section Induces Microbiota-Regulated Immune Disturbances in C57BL/6 Mice

    Fisker, Line, Krych, Lukasz, Rasmussen, S. H., Nielsen, Dennis Sandris, Kot, W., Holm, T. L., Hansen, Axel Kornerup & Hansen, Camilla Hartmann Friis, 2019, In : Journal of Immunology. 202, 1, p. 142-150

    Research output: Contribution to journalJournal articleResearchpeer-review

  47. Published

    Cesarean section increases sensitivity to oxazolone-induced colitis in C57BL/6 mice

    Fisker, Line, Hansen, Axel Kornerup, Krych, Lukasz, Nielsen, Dennis Sandris, Holm, T. L., Tougaard, P. & Hansen, Camilla Hartmann Friis, 2019, In : Mucosal Immunology. 12, 6, p. 1348-1357 10 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  48. Published

    Changes in the Quality of Chicken Breast Meat due to Superchilling and Temperature Fluctuations during Storage

    Kaewthong, P., Pomponio, L., Ruiz Carrascal, Jorge, Knøchel, Susanne, Wattanachant, S. & Karlsson, A. H., 2019, In : Journal of Poultry Science. 56, 4, p. 308-317

    Research output: Contribution to journalJournal articleResearchpeer-review

  49. Published

    Colonization of Cutibacterium avidum during infant gut microbiota establishment

    Rocha Martin, V. N., Schwab, C., Krych, Lukasz, Voney, E., Geirnaert, A., Braegger, C. & Lacroix, C., 2019, In : FEMS Microbiology Ecology. 95, 1, p. 1-14 fiy215.

    Research output: Contribution to journalJournal articleResearchpeer-review

  50. Published

    Correlates of gut function in children hospitalized for severe acute malnutrition, a cross-sectional study in Uganda

    Lanyero, B., Grenov, Benedikte, Barungi, N. N., Namusoke, H., Michaelsen, Kim F., Mupere, E., Mølgaard, Christian, Jiang, P., Frøkiær, Hanne, Wiese, M., Muhammed, Musemma Kedir, Pesu, Hannah, Nielsen, Dennis Sandris, Friis, Henrik, Rytter, Maren Johanne Heilskov & Christensen, V. B., 2019, In : Journal of Pediatric Gastroenterology and Nutrition. 69, 3, p. 292-298 6 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  51. Published

    DNA enrichment and tagmentation method for species-level identification and strain-level differentiation using ON-rep-seq

    Krych, Lukasz, Castro Mejia, Josue Leonardo, Forero-Junco, L. M., Moesby, D. N., Mikkelsen, M. B., Rasmussen, Morten Arendt, Sykulski, M. & Nielsen, Dennis Sandris, 2019, In : Communications Biology. 2, 10 p., 369.

    Research output: Contribution to journalJournal articleResearchpeer-review

  52. Published

    Dark chocolate as a stable carrier of microencapsulated Akkermansia muciniphila and Lactobacillus casei

    Marcial-Coba, M. S., Saaby, L., Knøchel, Susanne & Nielsen, Dennis Sandris, 2019, In : FEMS Microbiology Letters. 366, 2, p. 1-6 fny290.

    Research output: Contribution to journalJournal articleResearchpeer-review

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