Microbiology and Fermentation

  1. 2020
  2. E-pub ahead of print

    Nutrient Restriction has Limited Short-Term Effects on Gut, Immunity, and Brain Development in Preterm Pigs

    Ahnfeldt, Agnethe May, Bæk, Ole, Hui, Yan, Nielsen, Charlotte Holme, Obelitz-Ryom, K., Busk-Anderson, T., Ruge, A., Holst, Jens Juul, Rudloff, S., Burrin, D., Nguyen, Duc Ninh, Nielsen, Dennis Sandris, Zachariassen, G., Bering, Stine Brandt, Thymann, Thomas & Sangild, Per Torp, 18 Feb 2020, In : The Journal of Nutrition. 12 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  3. Accepted/In press

    Oenococcus oeni, a species born and moulded in wine: a critical review of the stress impacts of wine and the physiological responses

    Bech-Terkilsen, Sebastian, Westman, J. O., Swiegers, J. H. & Siegumfeldt, Henrik, 1 Jan 2020, (Accepted/In press) In : Australian Journal of Grape and Wine Research.

    Research output: Contribution to journalReviewResearchpeer-review

  4. Accepted/In press

    Faecal virome transplantation decreases symptoms of type 2 diabetes and obesity in a murine model

    Rasmussen, Torben Sølbeck, Mentzel, Caroline M. Junker, Kot, Witold, Castro Mejia, Josue Leonardo, Zuffa, S., Swann, J. R., Hansen, Lars Hestbjerg, Vogensen, Finn Kvist, Hansen, Axel Kornerup & Nielsen, Dennis Sandris, 1 Jan 2020, (Accepted/In press) In : Gut. 9 p., 320005.

    Research output: Contribution to journalJournal articleResearchpeer-review

  5. Accepted/In press

    Gastrointestinal toxicity during induction treatment for childhood acute lymphoblastic leukemia: the impact of the gut microbiota

    De Pietri, S., Ingham, A. C., Frandsen, T. L., Rathe, M., Krych, Lukasz, Castro Mejia, Josue Leonardo, Nielsen, Dennis Sandris, Nersting, J., Wehner, P. S., Schmiegelow, Kjeld, Hasle, H., Pamp, S. J. & Muller, Klaus, 1 Jan 2020, (Accepted/In press) In : International Journal of Cancer. 10 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  6. Accepted/In press

    Restitution of gut microbiota in Ugandan children administered with probiotics (Lactobacillus rhamnosus GG and Bifidobacterium animalis subsp. lactis BB-12) during treatment for severe acute malnutrition

    Castro Mejia, Josue Leonardo, O’Ferrall, S., Krych, Lukasz, O’Mahony, E., Namusoke, H., Lanyero, B., Kot, Witold, Nabukeera-Barungi, N., Michaelsen, Kim F., Mølgaard, Christian, Friis, Henrik, Grenov, Benedikte & Nielsen, Dennis Sandris, 1 Jan 2020, (Accepted/In press) In : Gut Microbes. 14 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  7. Accepted/In press

    The quorum-sensing molecule 2-phenylethanol impaired conidial germination, hyphal membrane integrity and growth of Penicillium expansum and Penicillium nordicum

    Huang, Chuchu, Qian, Y., Viana, T., Siegumfeldt, Henrik, Arneborg, Nils, Larsen, N. & Jespersen, Lene, 1 Jan 2020, (Accepted/In press) In : Journal of Applied Microbiology.

    Research output: Contribution to journalJournal articleResearchpeer-review

  8. Published

    Lactobacillus rhamnosus GG Genomic and Phenotypic Stability in an Industrial Production Process

    Strickertsson, Marianne Stage, Wichmann, A., Jørgensen, M., Vera-Jimenéz, N. I., Wielje, M., Nielsen, Dennis Sandris, Sandelin, Albin Gustav, Chen, Y. & Baker, A., 2020, In : Applied and Environmental Microbiology. 86, 6, 15 p., e02780-19.

    Research output: Contribution to journalJournal articleResearchpeer-review

  9. Published

    A chromatographic approach to understanding the plasmin-plasminogen system in acid whey

    Nurup, Casper Normann, Czárán, T. L. & Rattray, Fergal Patrick, 2020, In : International Dairy Journal. 106, 7 p., 104705.

    Research output: Contribution to journalJournal articleResearchpeer-review

  10. Published

    Alpha-Lactalbumin Enriched Whey Protein Concentrate to Improve Gut, Immunity and Brain Development in Preterm Pigs

    Nielsen, Charlotte Holme, Hui, Yan, Nguyen, Duc Ninh, Ahnfeldt, Agnethe May, Burrin, D. G., Hartmann, Bolette, Heckmann, A. B., Sangild, Per Torp, Thymann, Thomas & Bering, Stine Brandt, 2020, In : Nutrients. 12, 1, 20 p., 245.

    Research output: Contribution to journalJournal articleResearchpeer-review

  11. Published

    Bacterial flow cytometry and imaging as potential process monitoring tools for industrial biotechnology

    Kadamalakunte Narayana, S., Mallick, S., Siegumfeldt, Henrik & van der Berg, Franciscus Winfried J, 2020, In : Fermentation. 6, 1, 15 p., 10.

    Research output: Contribution to journalJournal articleResearchpeer-review

  12. Published

    Dietary Inulin and Trichuris suis Infection Promote Beneficial Bacteria Throughout the Porcine Gut

    Stolzenbach, S., Myhill, Laura Jessica, Andersen, L. O., Krych, Lukasz, Mejer, Helena, Williams, Andrew Richard, Nejsum, P., Stensvold, C. R., Nielsen, Dennis Sandris & Thamsborg, Stig Milan, 2020, In : Frontiers in Microbiology. 11, 15 p., 312.

    Research output: Contribution to journalJournal articleResearchpeer-review

  13. Published

    Diversity in NaCl tolerance of Lactococcus lactis strains from DL-starter cultures for production of semi-hard cheeses

    Kristensen, L. S., Siegumfeldt, Henrik, Larsen, N. & Jespersen, Lene, 2020, In : International Dairy Journal. 105, 5 p., 104673.

    Research output: Contribution to journalJournal articleResearchpeer-review

  14. Published

    Fast measurement of phosphates and ammonium in fermentation-like media: A feasibility study

    Pontius, K., Praticò, G., Larsen, F. H., Skov, T., Arneborg, Nils, Lantz, A. E. & Bevilacqua, Marta, 2020, In : New Biotechnology. 56, p. 54-62 9 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  15. Published

    Fermentable Dietary Fiber Promotes Helminth Infection and Exacerbates Host Inflammatory Responses

    Myhill, Laura Jessica, Stolzenbach, S., Mejer, Helena, Jakobsen, S. R., Hansen, T. V. A., Andersen, D., Brix, S., Hansen, Lars Hestbjerg, Krych, Lukasz, Nielsen, Dennis Sandris, Nejsum, P., Thamsborg, Stig Milan & Williams, Andrew Richard, 2020, In : The Journal of Immunology. 204, 11, p. 3042-3055 14 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  16. Published

    Gut microbiota mediates intermittent-fasting alleviation of diabetes-induced cognitive impairment

    Liu, Z., Dai, X., Zhang, H., Shi, R., Hui, Yan, Jin, X., Zhang, W., Wang, L., Wang, Q., Wang, D., Wang, J., Tan, X., Ren, B., Liu, X., Zhao, T., Wang, J., Pan, J., Yuan, T., Chu, C., Lan, L., Yin, F., Cadenas, E., Shi, L., Zhao, S. & Liu, X., 2020, In : Nature Communications. 11, 14 p., 855.

    Research output: Contribution to journalJournal articleResearchpeer-review

  17. Published

    Histamine forming behaviour of bacterial isolates from aged cheese

    Møller, Cleide Oliveira de Almeida, Üçok, Elif Fatma & Rattray, Fergal Patrick, 2020, In : Food Research International. 128, 10 p., 108719.

    Research output: Contribution to journalJournal articleResearchpeer-review

  18. Published

    Housing temperature influences exercise training adaptations in mice

    Raun, Steffen Henning, Henriquez Olguín, Carlos, Karavaeva, Iuliia, Ali, Mona Sadek, Møller, Lisbeth L V, Kot, Witold, Castro Mejia, Josue Leonardo, Nielsen, Dennis Sandris, Gerhart-Hines, Z., Richter, Erik A. & Sylow, Lykke, 2020, In : Nature Communications. 11, 16 p., 1560.

    Research output: Contribution to journalJournal articleResearchpeer-review

  19. Published

    Impact of Dietary Supplementation of Lactic Acid Bacteria Fermented Rapeseed with or without Macroalgae on Performance and Health of Piglets Following Omission of Medicinal Zinc from Weaner Diets

    Satessa, Gizaw Dabessa, Tamez-Hidalgo , P., Hui, Yan, Cieplak, T., Krych, Lukasz, Kjærulff , S., Brunsgaard , G., Nielsen, Dennis Sandris & Nielsen, M. O., 2020, In : Animals. 10, 1, 137.

    Research output: Contribution to journalJournal articleResearchpeer-review

  20. Published

    Inulin and milk mineral fortification of a pork sausage exhibits distinct effects on the microbiome and biochemical activity in the gut of healthy rats

    Thøgersen, R., Castro Mejia, Josue Leonardo, Sundekilde, U. K., Hansen, Lars Hestbjerg, Gray, N., Kuhnle, G., Jørgensen, Niklas Rye, Hansen, Axel Kornerup, Nielsen, Dennis Sandris & Bertram, H. C., 2020, In : Food Chemistry. 331, 10 p., 127291.

    Research output: Contribution to journalJournal articleResearchpeer-review

  21. Published

    Metabolic Effects of Bovine Milk Oligosaccharides on Selected Commensals of the Infant Microbiome - Commensalism and Postbiotic Effects

    Jakobsen, L. M. A., Maldonado-Gómez, M. X., Sundekilde, U. K., Andersen, H. J., Nielsen, Dennis Sandris & Bertram, H. C., 2020, In : Metabolites. 10, 4, 13 p., 167.

    Research output: Contribution to journalJournal articleResearchpeer-review

  22. Published

    Microbiota in foods from Inuit traditional hunting

    Hauptmann, A. L., Paulová, P., Hansen, Lars Hestbjerg, Sicheritz-Pontén, Thomas, Mulvad, G. & Nielsen, Dennis Sandris, 2020, In : PLoS ONE. 15, 1, 15 p., e0227819.

    Research output: Contribution to journalJournal articleResearchpeer-review

  23. Published

    PREDOMINANCE OF BACILLUS SPP. DURING THE PRODUCTION OF MANTCHOUA, A TRADITIONAL KAPOK SEED FERMENTED CONDIMENT FROM BURKINA FASO

    Kere-Kando, C., Johansen, Pernille Greve, Compaoré, C. S., Sawadogo-Lingani, H., A.-Ouédraogo, G., Diawara, B., Thorsen, L. & Jespersen, Lene, 2020, In : Journal of Microbiology, Biotechnology and Food Sciences. 9, 5, p. 1009-1015

    Research output: Contribution to journalJournal articleResearchpeer-review

  24. Published
  25. Published

    Pretreatment Prevotella-to-Bacteroides ratio and salivary amylase gene copy number as prognostic markers for dietary weight loss

    Hjorth, Mads Fiil, Christensen, Lars, Larsen, T. M., Roager, Henrik Munch, Krych, Lukasz, Kot, Witold, Nielsen, Dennis Sandris, Ritz, Christian & Astrup, Arne, 2020, In : American Journal of Clinical Nutrition. 111, 5, p. 1079-1086 8 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  26. Published

    Starch/Poly(glycerol-adipate) Nanocomposites: A Novel Oral Drug Delivery Device

    Vestri, A., Pearce, A. K., Cavanagh, R., Styliari, I. D., Sanders, C., Couturaud, B., Schenone, S., Taresco, V., Jakobsen, Rasmus Riemer, Howdle, S. M., Musumeci, F. & Sagnelli, D., 2020, In : Coatings. 10, 2, 15 p., 125.

    Research output: Contribution to journalJournal articleResearchpeer-review

  27. Published

    Stress Tolerance of Yeasts Dominating Reverse Osmosis Membranes for Whey Water Treatment

    Vitzilaiou, Eirini, Aunsbjerg, S. D., Mahyudin, N. A. & Knøchel, Susanne, 2020, In : Frontiers in Microbiology. 11, 16 p., 816.

    Research output: Contribution to journalJournal articleResearchpeer-review

  28. Published

    Technological properties of indigenous Lactococcus lactis strains isolated from Lait caillé, a spontaneous fermented milk from Burkina Faso

    Bayili, G. R., Johansen, Pernille Greve, Hougaard, Anni Bygvrå, Diawara, B., Ouedraogo, G. A., Jespersen, Lene & Sawadogo-Lingani, H., 2020, In : Journal of Dairy Research. 87, 1, p. 110-116 7 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  29. Published

    The microbial composition of dried fish prepared according to Greenlandic Inuit traditions and industrial counterparts

    Hauptmann, A. L., Paulová, P., Castro Mejia, Josue Leonardo, Hansen, L. H., Sicheritz-Pontén, Thomas, Mulvad, G. & Nielsen, Dennis Sandris, 2020, In : Food Microbiology. 85, 11 p., 103305.

    Research output: Contribution to journalJournal articleResearchpeer-review

  30. Published

    Virulent coliphages in 1-year-old children fecal samples are fewer, but more infectious than temperate coliphages

    Mathieu, A., Dion, M., Deng, Ling, Tremblay, D., Moncaut, E., Shah, S. A., Stokholm, J., Krogfelt, K. A., Schjørring, S., Bisgaard, Hans, Nielsen, Dennis Sandris, Moineau, S. & Petit, M., 2020, In : Nature Communications. 11, 12 p., 378.

    Research output: Contribution to journalJournal articleResearchpeer-review

  31. 2019
  32. Published

    Proteomics insights into the responses of Saccharomyces cerevisiae during mixed-culture alcoholic fermentation with Lachancea thermotolerans

    Peng, C., Andersen, Birgit, Arshid, S., Larsen, M. R., Albergaria, H., Lametsch, Rene & Arneborg, Nils, 1 Sep 2019, In : FEMS Microbiology Ecology. 95, 9, p. 1-16 fiz126.

    Research output: Contribution to journalJournal articleResearchpeer-review

  33. Published

    Editorial: Microbial food and feed ingredients - reconciling tradition and novelty

    Hansen, E. B., Nielsen, Dennis Sandris & LaPointe, G., 1 Jun 2019, In : FEMS Microbiology Letters. 366, 11, 2 p., fnz130.

    Research output: Contribution to journalEditorialResearchpeer-review

  34. Published

    Prevotella abundance predicts weight loss success in healthy, overweight adults consuming a whole-grain diet ad libitum: A post hoc analysis of a 6-wk randomized controlled trial

    Christensen, Lars, Vuholm, S., Roager, Henrik Munch, Nielsen, Dennis Sandris, Krych, Lukasz, Kristensen, M. B., Astrup, Arne & Hjorth, Mads Fiil, 2019, In : Journal of Nutrition. 149, 12, p. 2174-2181 8 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  35. Published

    In vitro modulation of human gut microbiota composition and metabolites by Bifidobacterium longum BB-46 and a citric pectin

    Bianchi, F., Larsen, N., Tieghi, T. D. M., Adorno, M. A. T., Saad, S. M. I., Jespersen, Lene & Sivieri, K., 2019, In : Food Research International. 120, p. 595-602

    Research output: Contribution to journalJournal articleResearchpeer-review

  36. Published

    A Protocol for Extraction of Infective Viromes Suitable for Metagenomics Sequencing from Low Volume Fecal Samples

    Deng, Ling, Silins, R., Castro Mejia, Josue Leonardo, Kot, W., Jessen, L., Thorsen, J., Shah, S., Stokholm, J., Bisgaard, Hans, Moineau, S. & Nielsen, Dennis Sandris, 2019, In : Viruses. 11, 7, 10 p., 667.

    Research output: Contribution to journalJournal articleResearchpeer-review

  37. Published

    A comparative genomics approach for identifying host-range determinants in Streptococcus thermophilus bacteriophages

    Szymczak, P., Rau, M. H., Monteiro, J. M., Pinho, M. G., Filipe, S. R., Vogensen, Finn Kvist, Zeidan, A. A. & Janzen, T., 2019, In : Scientific Reports. 9, 14 p., 7991.

    Research output: Contribution to journalJournal articleResearchpeer-review

  38. Published

    ApoE-dependent protective effects of sesamol on high-fat diet-induced behavioral disorders: regulation of the microbiome-gut-brain axis

    Yuan, T., Chu, C., Shi, R., Cui, T., Zhang, X., Zhao, Y., Shi, X., Hui, Yan, Pan, J., Qian, R., Dai, X., Liu, Z. & Liu, X., 2019, In : Journal of Agricultural and Food Chemistry. 67, 22, p. 6190-6201

    Research output: Contribution to journalJournal articleResearchpeer-review

  39. Published

    Bacterial species to be considered in quality assurance of mice and rats

    Hansen, Axel Kornerup, Nielsen, Dennis Sandris, Krych, Lukasz & Hansen, Camilla Hartmann Friis, 2019, In : Laboratory Animals. 53, 3, p. 281-291

    Research output: Contribution to journalJournal articleResearchpeer-review

  40. Published

    Can community-based signalling behaviour in Saccharomyces cerevisiae be called quorum sensing? a critical review of the literature

    Winters, Michela, Arneborg, Nils, Appels, R. & Howell, K., 2019, In : FEMS Yeast Research. 19, 5, 11 p., foz046.

    Research output: Contribution to journalReviewResearchpeer-review

  41. Published

    Cesarean Section Induces Microbiota-Regulated Immune Disturbances in C57BL/6 Mice

    Fisker, Line, Krych, Lukasz, Rasmussen, S. H., Nielsen, Dennis Sandris, Kot, W., Holm, T. L., Hansen, Axel Kornerup & Hansen, Camilla Hartmann Friis, 2019, In : Journal of Immunology. 202, 1, p. 142-150

    Research output: Contribution to journalJournal articleResearchpeer-review

  42. Published

    Cesarean section increases sensitivity to oxazolone-induced colitis in C57BL/6 mice

    Fisker, Line, Hansen, Axel Kornerup, Krych, Lukasz, Nielsen, Dennis Sandris, Holm, T. L., Tougaard, P. & Hansen, Camilla Hartmann Friis, 2019, In : Mucosal Immunology. 12, 6, p. 1348-1357 10 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  43. Published

    Changes in the Quality of Chicken Breast Meat due to Superchilling and Temperature Fluctuations during Storage

    Kaewthong, P., Pomponio, L., Ruiz Carrascal, Jorge, Knøchel, Susanne, Wattanachant, S. & Karlsson, A. H., 2019, In : Journal of Poultry Science. 56, 4, p. 308-317

    Research output: Contribution to journalJournal articleResearchpeer-review

  44. Published

    Colonization of Cutibacterium avidum during infant gut microbiota establishment

    Rocha Martin, V. N., Schwab, C., Krych, Lukasz, Voney, E., Geirnaert, A., Braegger, C. & Lacroix, C., 2019, In : FEMS Microbiology Ecology. 95, 1, p. 1-14 fiy215.

    Research output: Contribution to journalJournal articleResearchpeer-review

  45. Published

    Correlates of gut function in children hospitalized for severe acute malnutrition, a cross-sectional study in Uganda

    Lanyero, B., Grenov, Benedikte, Barungi, N. N., Namusoke, H., Michaelsen, Kim F., Mupere, E., Mølgaard, Christian, Jiang, P., Frøkiær, Hanne, Wiese, M., Muhammed, Musemma Kedir, Pesu, Hannah, Nielsen, Dennis Sandris, Friis, Henrik, Rytter, Maren Johanne Heilskov & Christensen, V. B., 2019, In : Journal of Pediatric Gastroenterology and Nutrition. 69, 3, p. 292-298 6 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  46. Published

    DNA enrichment and tagmentation method for species-level identification and strain-level differentiation using ON-rep-seq

    Krych, Lukasz, Castro Mejia, Josue Leonardo, Forero-Junco, L. M., Moesby, D. N., Mikkelsen, M. B., Rasmussen, Morten Arendt, Sykulski, M. & Nielsen, Dennis Sandris, 2019, In : Communications Biology. 2, 10 p., 369.

    Research output: Contribution to journalJournal articleResearchpeer-review

  47. Published

    Dark chocolate as a stable carrier of microencapsulated Akkermansia muciniphila and Lactobacillus casei

    Marcial-Coba, M. S., Saaby, L., Knøchel, Susanne & Nielsen, Dennis Sandris, 2019, In : FEMS Microbiology Letters. 366, 2, p. 1-6 fny290.

    Research output: Contribution to journalJournal articleResearchpeer-review

  48. Published

    Development of the equine gut microbiota

    Lindenberg, F., Krych, Lukasz, Kot, Witold, Fielden, J., Frøkiær, Hanne, van Galen, G., Nielsen, Dennis Sandris & Hansen, Axel Kornerup, 2019, In : Scientific Reports. 9, 1, 9 p., 14427.

    Research output: Contribution to journalJournal articleResearchpeer-review

  49. Published

    Draft Genome Sequence of Streptococcus anginosus Strain CALM001, Isolated from the Gut of an Elderly Dane

    Ahmad, H. F., Schreiber, L., Marshall, I. P. G., Andersen, P. J., Castro Mejia, Josue Leonardo & Nielsen, Dennis Sandris, 2019, In : Microbiology resource announcements. 8, 24, 2 p., e00379-19.

    Research output: Contribution to journalJournal articleResearchpeer-review

  50. Published

    Dried date paste as carrier of the proposed probiotic Bacillus coagulans BC4 and viability assessment during storage and simulated gastric passage

    Marcial-Coba, M. S., Pjaca, A. S., Andersen, C. J., Knøchel, Susanne & Nielsen, Dennis Sandris, 2019, In : Lebensmittel - Wissenschaft und Technologie. 99, p. 197-201

    Research output: Contribution to journalJournal articleResearchpeer-review

  51. Published
  52. Published

    Effect of potato fiber on survival of Lactobacillus species at simulated gastric conditions and composition of the gut microbiota in vitro

    Larsen, N., de Souza, C. B., Krych, Lukasz, Kot, W., Leser, T. D., Sørensen, O. B., Blennow, Andreas, Venema, K. & Jespersen, Lene, 2019, In : Food Research International. 125, 9 p., 108644.

    Research output: Contribution to journalJournal articleResearchpeer-review

  53. Published

    Effects of intrinsic microbial stress factors on viability and physiological condition of yeasts isolated from spontaneously fermented cereal doughs

    Houngbédji, M., Johansen, Pernille Greve, Padonou, S. W., Hounhouigan, D. J., Siegumfeldt, Henrik & Jespersen, Lene, 2019, In : International Journal of Food Microbiology. 304, p. 75-88

    Research output: Contribution to journalJournal articleResearchpeer-review

  54. Published

    Environmental heterogeneity of Staphylococcus species from alkaline fermented foods and associated toxins and antimicrobial resistance genetic elements

    Ouoba, L. I. I., Vouidibio Mbozo, A. B., Anyogu, A., Obioha, P. I., Lingani-Sawadogo, H., Sutherland, J. P., Jespersen, Lene & Ghoddusi, H. B., 2019, In : International Journal of Food Microbiology. 311, 12 p., 108356.

    Research output: Contribution to journalJournal articleResearchpeer-review

  55. Published

    Evaluation of the inhibitory effect of alginate oligosaccharide on yeast and mould in yoghurt

    Bouillon, Grégoire Antoine J R, Gåserød, O. & Rattray, Fergal Patrick, 2019, In : International Dairy Journal. 99, 9 p., 104554.

    Research output: Contribution to journalJournal articleResearchpeer-review

  56. Published

    Expression of immune regulatory genes correlate with the abundance of specific Clostridiales and Verrucomicrobia species in the equine ileum and cecum

    Lindenberg, F., Krych, Lukasz, Fielden, J., Kot, Witold, Frøkiær, Hanne, van Galen, G., Nielsen, Dennis Sandris & Hansen, Axel Kornerup, 2019, In : Scientific Reports. 9, 1, 10 p., 12674.

    Research output: Contribution to journalJournal articleResearchpeer-review

  57. Published

    Fate of CMY-2-Encoding Plasmids Introduced into the Human Fecal Microbiota by Exogenous Escherichia coli

    Anjum, M., Madsen, Jonas Stenløkke, Nesme, Joseph, Jana, B., Wiese, M., Jasinskyte, D., Nielsen, Dennis Sandris, Sørensen, Søren Johannes, Dalsgaard, Anders, Moodley, Arshnee, Bortolaia, V. & Guardabassi, Luca, 2019, In : Antimicrobial Agents and Chemotherapy. 63, 5, 13 p., e02528-18.

    Research output: Contribution to journalJournal articleResearchpeer-review

  58. Published

    Gut and immune effects of bioactive milk factors in preterm pigs exposed to prenatal inflammation

    Ren, S., Hui, Yan, Goericke-Pesch, S., Pankratova, Stanislava, Kot, Witold, Pan, Xiaoyu, Thymann, Thomas, Sangild, Per Torp & Nguyen, Duc Ninh, 2019, In : American Journal of Physiology: Gastrointestinal and Liver Physiology. 317, 1, p. G67-G77

    Research output: Contribution to journalJournal articleResearchpeer-review

  59. Published

    Identification of the predominant microbiota during production of lait caillé, a spontaneously fermented milk product made in Burkina Faso

    Bayili, G. R., Johansen, Pernille Greve, Nielsen, Dennis Sandris, Sawadogo-Lingani, H., Ouédraogo, G., Diawara, B. & Jespersen, Lene, 2019, In : World journal of microbiology & biotechnology. 35, 7, 13 p., 100.

    Research output: Contribution to journalJournal articleResearchpeer-review

  60. Published

    Impact of Early Exposure to Cefuroxime on the Composition of the Gut Microbiota in Infants Following Cesarean Delivery

    Bin Shamzir Kamal, Shamrulazhar, Hyldig, N., Krych, Lukasz, Greisen, Gorm, Krogfelt, K. A., Zachariassen, G. & Nielsen, Dennis Sandris, 2019, In : Journal of Pediatrics. 210, p. 99-105, e1-e2

    Research output: Contribution to journalJournal articleResearchpeer-review

  61. Published

    Impact of botanical fermented foods on metabolic biomarkers and gut microbiota in adults with metabolic syndrome and type 2 diabetes: a systematic review protocol

    Chan, M., Baxter, H., Larsen, N., Jespersen, Lene, Ekinci, E. I. & Howell, K., 2019, In : BMJ Open. 9, 7, 5 p., e029242.

    Research output: Contribution to journalReviewResearchpeer-review

  62. Published

    Investigating risk of suboptimal macro and micronutrient intake and their determinants in older Danish adults with specific focus on protein intake — a cross-sectional study

    Schacht, Simon Rønnow, Lind, Mads Vendelbo, Bechshøft, R. L., Højfeldt, G., Reitelseder, S., Jensen, Tenna, Jespersen, Astrid Pernille, Nielsen, Dennis Sandris, Holm, L. & Tetens, Inge , 2019, In : Nutrients. 11, 4, 14 p., 795.

    Research output: Contribution to journalJournal articleResearchpeer-review

  63. Published

    Isolation and characterization of bacteriophages active against methicillin-resistant Staphylococcus pseudintermedius

    Moodley, Arshnee, Kot, W., Nälgård, S., Jakociune, D., Neve, H., Hansen, L. H., Guardabassi, Luca & Vogensen, Finn Kvist, 2019, In : Research in Veterinary Science. 122, p. 81-85 5 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  64. Published

    Kombucha beverage from green, black and rooibos teas: a comparative study looking at microbiology, chemistry and antioxidant activity

    Gaggìa, F., Baffoni, L., Galiano, M., Nielsen, Dennis Sandris, Jakobsen, Rasmus Riemer, Castro Mejia, Josue Leonardo, Bosi, S., Truzzi, F., Musumeci, F., Dinelli, G. & Di Gioia, D., 2019, In : Nutrients. 11, 1, p. 1-22 1.

    Research output: Contribution to journalJournal articleResearchpeer-review

  65. Published

    Lactose and Bovine Milk Oligosaccharides Synergistically Stimulate B. longum subsp. longum Growth in a Simplified Model of the Infant Gut Microbiome

    Jakobsen, L. M. A., Sundekilde, U. K., Andersen, H. J., Nielsen, Dennis Sandris & Bertram, H. C., 2019, In : Journal of Proteome Research. 18, 8, p. 3086-3098

    Research output: Contribution to journalJournal articleResearchpeer-review

  66. Published

    Linking cocoa varietals and microbial diversity of Nicaraguan fine cocoa bean fermentations and their impact on final cocoa quality appreciation

    Papalexandratou, Z., Kaasik, K., Kauffmann, L. V., Skorstengaard, A., Bouillon, Grégoire Antoine J R, Espensen, J. L., Hansen, L. H., Jakobsen, Rasmus Riemer, Blennow, Andreas, Krych, Lukasz, Castro Mejia, Josue Leonardo & Nielsen, Dennis Sandris, 2019, In : International Journal of Food Microbiology. 304, p. 106-118

    Research output: Contribution to journalJournal articleResearchpeer-review

  67. Published

    Low-moisture food matrices as probiotic carriers

    Marcial-Coba, M. S., Knøchel, Susanne & Nielsen, Dennis Sandris, 2019, In : FEMS Microbiology Letters. 366, 2, p. 1-11 fnz006.

    Research output: Contribution to journalReviewResearchpeer-review

  68. Published

    Microbial Ecology of Fremented Foods: Case Studies from Industrialized and Household Productions

    Johansen, Pernille Greve, 2019, Department of Food Science, Faculty of Science, University of Copenhagen.

    Research output: Book/ReportPh.D. thesisResearch

  69. Published

    Microbial biofilm communities on Reverse Osmosis membranes in whey water processing before and after cleaning

    Vitzilaiou, Eirini, Stoica, I. & Knøchel, Susanne, 2019, In : Journal of Membrane Science. 587, 8 p., 117174.

    Research output: Contribution to journalJournal articleResearchpeer-review

  70. Published
  71. Published

    Novel isolates of Streptococcus thermophilus bacteriophages from group 5093 identified with an improved multiplex PCR typing method

    Szymczak, P., Vogensen, Finn Kvist & Janzen, T., 2019, In : International Dairy Journal. 91, p. 18-24 7 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  72. Published

    Oat bran, but not its isolated bioactive β-glucans or polyphenols, have a bifidogenic effect in an in vitro fermentation model of the gut microbiota

    Kristek, A., Wiese, M., Heuer, P., Kosik, O., Schär, M. Y., Soycan, G., Alsharif, S., Kuhnle, G. G. C., Walton, G. & Spencer, J. P. E., 2019, In : British Journal of Nutrition. 121, 5, p. 549-559

    Research output: Contribution to journalJournal articleResearchpeer-review

  73. Published

    Occurrence and Importance of Yeasts in Indigenous Fermented Food and Beverages Produced in Sub-Saharan Africa

    Johansen, Pernille Greve, Owusu-Kwarteng, J., Parkouda, C., Padonou, S. W. & Jespersen, Lene, 2019, In : Frontiers in Microbiology. 10, 22 p., 1789.

    Research output: Contribution to journalReviewResearchpeer-review

  74. Published

    Oral LPS Dosing Induces Local Immunological Changes in the Pancreatic Lymph Nodes in Mice

    Kihl, P., Krych, Lukasz, Deng, Ling, Kildemoes, A. O., Laigaard, A., Hansen, L. H., Hansen, Camilla Hartmann Friis, Buschard, K., Nielsen, Dennis Sandris & Hansen, Axel Kornerup, 2019, In : Journal of Diabetes Research. 2019, 9 p., 1649279.

    Research output: Contribution to journalJournal articleResearchpeer-review

  75. Published

    Potential of Pectins to Beneficially Modulate the Gut Microbiota Depends on Their Structural Properties

    Larsen, N., de Souza, C. B., Krych, Lukasz, Cahú, T. B., Wiese, M., Kot, W., Hansen, K. M., Blennow, Andreas, Venema, K. & Jespersen, Lene, 2019, In : Frontiers in Microbiology. 10, p. 1-13 223.

    Research output: Contribution to journalJournal articleResearchpeer-review

  76. Published

    Prebiotic Effect of Lycopene and Dark Chocolate on Gut Microbiome with Systemic Changes in Liver Metabolism, Skeletal Muscles and Skin in Moderately Obese Persons

    Wiese, M., Bashmakov, Y., Chalyk, N., Nielsen, Dennis Sandris, Krych, Lukasz, Kot, W., Klochkov, V., Pristensky, D., Bandaletova, T., Chernyshova, M., Kyle, N. & Petyaev, I., 2019, In : BioMed Research International. 2019, 15 p., 4625279.

    Research output: Contribution to journalJournal articleResearchpeer-review

  77. Published

    Preterm Birth Has Effects on Gut Colonization in Piglets Within the First 4 Weeks of Life

    Bin Shamzir Kamal, Shamrulazhar, Andersen, A. D., Krych, Lukasz, Lauridsen, C., Sangild, Per Torp, Thymann, Thomas & Nielsen, Dennis Sandris, 2019, In : Journal of Pediatric Gastroenterology and Nutrition. 68, 5, p. 727-733 7 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  78. Published

    Red-Brown Pigmentation of Acidipropionibacterium jensenii is Tied to Haemolytic Activity and cyl-Like Gene Cluster

    Deptula, Paulina, Loivamaa, I., Smolander, O. P., Laine, P., Roberts, R. J., Piironen, V., Paulin, L., Savijoki, K., Auvinen, P. & Varmanen, P., 2019, In : Microorganisms. 7, 11, 15 p., 512.

    Research output: Contribution to journalJournal articleResearchpeer-review

  79. Published

    Severe gut microbiota dysbiosis caused by malnourishment can be partly restored during 3 weeks of refeeding with fortified corn-soy-blend in a piglet model of childhood malnutrition

    Leng, B., Sørensen, M. B., Kot, W., Thymann, Thomas, Krych, Lukasz & Nielsen, Dennis Sandris, 2019, In : BMC Microbiology. 19, 9 p., 277.

    Research output: Contribution to journalJournal articleResearchpeer-review

  80. Published

    Short communication: Gut microbial colonization of the mouse colon using faecal transfer was equally effective when comparing rectal inoculation and oral inoculation based on 16S rRNA sequencing

    Lützhøft, Ditte Olsen, Sánchez-Alcoholado, L., Tougaard, P., Mentzel, Caroline M. Junker, Kot, Witold, Nielsen, Dennis Sandris & Hansen, Axel Kornerup, 2019, In : Research in Veterinary Science. 126, p. 227-232 6 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  81. Published

    Supplementation of Sesamin Alleviates Stress-Induced Behavioral and Psychological Disorders via Reshaping the Gut Microbiota Structure

    Wang, Q., Jia, M., Zhao, Y., Hui, Yan, Pan, J., Yu, H., Yan, S., Dai, X., Liu, X. & Liu, Z., 2019, In : Journal of Agricultural and Food Chemistry. 67, 45, p. 12441-12451 11 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  82. Published

    Surface engineered bacteria as Pickering stabilizers for foams and emulsions

    Jiang, Xiaoyi, Yucel Falco, Cigdem, Dalby, K. N., Siegumfeldt, Henrik, Arneborg, Nils & Risbo, Jens, 2019, In : Food Hydrocolloids. 89, p. 224-233 10 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  83. Published

    TL1A Aggravates Cytokine-Induced Acute Gut Inflammation and Potentiates Infiltration of Intraepithelial Natural Killer Cells in Mice

    Tougaard, P., Martinsen, L. O., Fisker, Line, Krych, Lukasz, Nielsen, Dennis Sandris, Buus, Terkild Brink, Pedersen, Anders Elm, Hansen, Axel Kornerup, Skov, Søren & Hansen, Camilla Hartmann Friis, 2019, In : Inflammatory Bowel Diseases. 25, 3, p. 510-523

    Research output: Contribution to journalJournal articleResearchpeer-review

  84. Published

    Targeting gut microbiota and barrier function with prebiotics to alleviate autoimmune manifestations in NOD mice

    Hansen, Camilla Hartmann Friis, Larsen, C. S., Petersson, H. O., Fisker, Line, Vegge, A., Lauridsen, C., Kot, W., Krych, Lukasz, Nielsen, Dennis Sandris & Hansen, Axel Kornerup, 2019, In : Diabetologia. 62, 9, p. 1689-1700

    Research output: Contribution to journalJournal articleResearchpeer-review

  85. Published

    The gut microbiome on a periodized low-protein diet is associated with improved metabolic health

    Li, Z., Rasmussen, Torben Sølbeck, Rasmussen, M. L., Li, J., Henriquez Olguín, Carlos, Kot, W., Nielsen, Dennis Sandris & Jensen, Thomas Elbenhardt, 2019, In : Frontiers in Microbiology. 10, 10 p., 709.

    Research output: Contribution to journalJournal articleResearchpeer-review

  86. Published

    The potential of pectin to impact pig nutrition and health: feeding the animal and its microbiome

    Wiese, M., 2019, In : FEMS Microbiology Letters. 366, 4, p. 1-15 fnz029.

    Research output: Contribution to journalJournal articleResearchpeer-review

  87. 2018
  88. Published

    In vitro studies of the impact of pectins on adhesion of Lactobacillus spp. to human epithelial cells and intestinal barrier integrity

    Srimahaeak, Thanyaporn, Bianchi, F., Chlumsky, O., Sivieri, K., Hansen, K. M., Leser, T., Larsen, N. & Jespersen, Lene, 2018.

    Research output: Contribution to conferencePosterResearchpeer-review

  89. Published

    Lactococcus lactis SK1virus Taxonomy and Development of High-Throughput qPCR Methods to Evaluate SK1virus Development in Dairies Using Undefined Starter Cultures

    Liu, C., 2018, Department of Food Science, Faculty of Science, University of Copenhagen.

    Research output: Book/ReportPh.D. thesisResearch

  90. Published

    A bacteriophage cocktail targeting Escherichia coli reduces E. coli in simulated gut conditions, while preserving a non-targeted representative commensal normal microbiota

    Cieplak, T., Soffer, N., Sulakvelidze, A. & Nielsen, Dennis Sandris, 2018, In : Gut Microbes. 9, 5, p. 391-399 9 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  91. Published

    A culture-independent method for studying transfer of IncI1 plasmids from wild-type Escherichia coli in complex microbial communities

    Anjum, M., Madsen, Jonas Stenløkke, Espinosa-Gongora, Carmen, Jana, B., Wiese, M., Nielsen, Dennis Sandris, Sørensen, Søren Johannes, Moodley, Arshnee, Bortolaia, V. & Guardabassi, Luca, 2018, In : Journal of Microbiological Methods. 152, p. 18-26 9 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  92. Published

    A prebiotic intervention study in children with autism spectrum disorders (ASDs)

    Grimaldi, R., Gibson, G. R., Vulevic, J., Giallourou, N., Castro Mejia, Josue Leonardo, Hansen, L. H., Gibson, E. L., Nielsen, Dennis Sandris & Costabile, A., 2018, In : Microbiome. 6, 13 p., 133.

    Research output: Contribution to journalJournal articleResearchpeer-review

  93. Published

    Biofouling on RO-membranes used for water recovery in the dairy industry

    Stoica, I., Vitzilaiou, Eirini, Røder, Henriette Lyng, Burmølle, Mette, Thaysen, D., Knøchel, Susanne & van der Berg, Franciscus Winfried J, 2018, In : Journal of Water Process Engineering. 24, p. 1-10 10 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  94. Published

    Bovine Milk Oligosaccharides with Sialyllactose for Preterm Piglets

    Obelitz-Ryom, K., Rendboe, A. K., Nguyen, Duc Ninh, Rudloff, S., Brandt, A. B., Nielsen, Dennis Sandris, Heckmann, A. B., Chichlowski, M., Sangild, Per Torp, Thymann, Thomas & Bering, Stine Brandt, 2018, In : Nutrients. 10, 10, p. 1-18 1489.

    Research output: Contribution to journalJournal articleResearchpeer-review

  95. Published
  96. Published

    Cell Wall Glycans Mediate Recognition of the Dairy Bacterium Streptococcus thermophilus by Bacteriophages

    Szymczak, P., Filipe, S. R., Covas, G., Vogensen, Finn Kvist, Neves, A. R. & Janzen, T., 2018, In : Applied and Environmental Microbiology. 84, 23, 15 p., e01847-18.

    Research output: Contribution to journalJournal articleResearchpeer-review

  97. Published

    Changes in Gut Microbiota Prior to Influenza A Virus Infection Do Not Affect Immune Responses in Pups or Juvenile Mice

    Fuglsang, E., Pizzolla, A., Krych, Lukasz, Nielsen, Dennis Sandris, Brooks, A. G., Frøkiær, Hanne & Reading, P. C., 2018, In : Frontiers in Cellular and Infection Microbiology. 8, 16 p., 319.

    Research output: Contribution to journalJournal articleResearchpeer-review

  98. Published
  99. Published
  100. Published

    Cheese brines from Danish dairies reveal a complex microbiota comprising several halotolerant bacteria and yeasts

    Haastrup, M. K., Johansen, Pernille Greve, Malskær, A. H., Castro Mejia, Josue Leonardo, Kot, W., Krych, Lukasz, Arneborg, Nils & Jespersen, Lene, 2018, In : International Journal of Food Microbiology. 285, p. 173-187 15 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  101. Published
  102. Published

    CoMiniGut - a small volume in vitro colon model for the screening of gut microbial fermentation processes

    Wiese, M., Khakimov, Bekzod, Nielsen, Sebastian, Sørensen, H., van der Berg, Franciscus Winfried J & Nielsen, Dennis Sandris, 2018, In : PeerJ. 6, 22 p., e4268.

    Research output: Contribution to journalJournal articleResearchpeer-review

  103. Published

    Comparison of oxidative stress response and biofilm formation of Listeria monocytogenes serotypes 4b and 1/2a

    Huang, Y., Morvay, A. A., Shi, X., Sou, Y., Shi, C. & Knøchel, Susanne, 2018, In : Food Control. 85, p. 416-422 7 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

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