Microbiology and Fermentation

  1. Published

    Screening for Bacillus subtilis group isolates that degrade cyanogens at pH 4.5-5.0.

    Abban, S., Brimer, L., Abdelgadir, W. S., Jakobsen, Mogens & Thorsen, L., 2013, In : International Journal of Food Microbiology. 161, 1, p. 31-35 5 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  2. Published

    A practical evaluation of detergent and disinfectant solutions on cargo container surfaces for bacteria inactivation efficacy and effect on material corrosion

    Abban, S., Jakobsen, Mogens & Jespersen, Lene, 2013, In : African Journal of Biotechnology. 12, 23, p. 3689-3698 10 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  3. Published

    Assessment of interplay between UV wavelengths, material surfaces and food residues in open surface hygiene validation

    Abban, S., Jakobsen, Mogens & Jespersen, Lene, 2014, In : Journal of Food Science and Technology. 51, 12, p. 3977-3983 7 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  4. Published

    Microbial behaviour and cross contamination between cargoes in containerized transportation of food

    Abban, S., 2013, Department of Food Science, University of Copenhagen. 183 p.

    Research output: Book/ReportPh.D. thesisResearch

  5. Published

    Lactobacillus delbrueckii subsp. jakobsenii subsp. nov., isolated from dolo wort, an alcoholic fermented beverage in Burkina Faso

    Adimpong, D. B., Nielsen, Dennis Sandris, Sørensen, K. I., Vogensen, Finn Kvist, Sawadogo-Lingani, H., Derkx, P. M. F. & Jespersen, Lene, 2013, In : International Journal of Systematic and Evolutionary Microbiology. 63, 11, p. 3720-3726 7 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  6. Published

    Draft whole-genome sequence of Bacillus sonorensis strain L12, a source of nonribosomal lipopeptides

    Adimpong, D. B., Sørensen, K. I., Nielsen, Dennis Sandris, Thorsen, L., Rasmussen, T. B., Derkx, P. M. F. & Jespersen, Lene, 2013, In : Genome Announcements. 1, 2, 2 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  7. Published

    Geno- and phenotypic characterization of lactic acid bacteria and Bacillus spp. strains isolated from African indigenous fermented food products and their applications in the food and feed industries

    Adimpong, D. B., 2013, Department of Food Science, University of Copenhagen. 137 p.

    Research output: Book/ReportPh.D. thesisResearch

  8. Published

    Biodiversity of aerobic endospore-forming bacterial species occurring in Yanyanku and Ikpiru, fermented seeds of Hibiscus sabdariffa used to produce food condiments in Benin

    Agbobatinkpo, P. B., Thorsen, L., Nielsen, Dennis Sandris, Azokpota, P., Akissoe, N., Hounhouigan, J. D. & Jakobsen, M., 2013, In : International Journal of Food Microbiology. 163, 2-3, p. 231-238 8 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  9. Published

    Draft Genome Sequence of Streptococcus anginosus Strain CALM001, Isolated from the Gut of an Elderly Dane

    Ahmad, H. F., Schreiber, L., Marshall, I. P. G., Andersen, P. J., Castro Mejia, Josue Leonardo & Nielsen, Dennis Sandris, 2019, In : Microbiology resource announcements. 8, 24, 2 p., e00379-19.

    Research output: Contribution to journalJournal articleResearchpeer-review

  10. Published

    Nutrient Restriction has Limited Short-Term Effects on Gut, Immunity, and Brain Development in Preterm Pigs

    Ahnfeldt, Agnethe May, Bæk, Ole, Hui, Yan, Nielsen, Charlotte Holme, Obelitz-Ryom, K., Busk-Anderson, T., Ruge, A., Holst, Jens Juul, Rudloff, S., Burrin, D., Nguyen, Duc Ninh, Nielsen, Dennis Sandris, Zachariassen, G., Bering, Stine Brandt, Thymann, Thomas & Sangild, Per Torp, 2020, In : The Journal of Nutrition. 150, 5, p. 1196-1207

    Research output: Contribution to journalJournal articleResearchpeer-review

  11. Published

    Taxonomic and molecular characterization of lactic acid bacteria and yeasts in nunu, a Ghanaian fermented milk product

    Akabanda, F., Owusu-Kwarteng, J., Tano-Debrah, K., Glover, R. L. K., Nielsen, Dennis Sandris & Jespersen, Lene, 2013, In : Food Microbiology. 34, 2, p. 277-283 7 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  12. Published

    The use of lactic acid bacteria starter culture in the production of Nunu, a spontaneously fermented milk product in Ghana

    Akabanda, F., Owusu-Kwarteng, J., Tano-Debrah, K., Parkouda, C. & Jespersen, Lene, 2014, In : International Journal of Food Science. 2014, 12 p., 721067.

    Research output: Contribution to journalJournal articleResearchpeer-review

  13. Published

    Interaction between sodium chloride and texture in semi-hard Danish cheese as affected by brining time, DL-starter culture, chymosin type and cheese ripening

    Akkerman, M., Søndergaard, Lise, Jespersen, Lene, Ryssel, M., Mackie, A., Larsen, N. N., Andersen, U., Nørgaard, M. K., Løkke, M. M., Møller, J. R., Mielby, L. A., Andersen, B. V., Kidmose, U. & Hammershøj, M., 2017, In : International Dairy Journal. 70, p. 34-45 12 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  14. Published

    Dominance of Saccharomyces cerevisiae in alcoholic fermentation processes: role of physiological fitness and microbial interactions

    Albergaria, H. & Arneborg, Nils, 2016, In : Applied Microbiology and Biotechnology. 100, 5, p. 2035-2046 12 p.

    Research output: Contribution to journalReviewResearchpeer-review

  15. Published

    Rheological and sensory properties and aroma compounds formed during ripening of soft brined cheese made from camel milk

    Alemu, Y. H., Hansen, E. B., Seifu, E., Petersen, Mikael Agerlin, Lametsch, Rene, Rattray, Fergal Patrick & Ipsen, Richard, 2018, In : International Dairy Journal. 81, p. 122-130 9 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  16. Published

    Classification of lytic bacteriophages attacking dairy Leuconostoc starter strains

    Ali, Y., Kot, Witold, Atamer, Z., Hinrichs, J., Vogensen, Finn Kvist, Heller, K. J. & Neve, H., 2013, In : Applied and Environmental Microbiology. 79, 12, p. 3628-3636 9 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  17. Published

    Reducing the atypical odour of dawadawa: effect of modification offermentation conditions and post-fermentation treatment on thedevelopment of the atypical odour of dawadawa

    Amoa-Awua, W. K., Awusi, B., Owusu, M., Appiah, V., Ofori, H., Thorsen, L. & Jespersen, Lene, 2014, In : Food Control. 42, p. 335-342 8 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  18. Published

    2-heptyl-formononetin increases cholesterol and induces hepatic steatosis in mice

    Andersen, C., Schjoldager, J. G., Tortzen, C., Vegge, A., Hufeldt, M. R., Skaanild, M. T., Vogensen, Finn Kvist, Kristiansen, Karsten, Hansen, Axel Kornerup & Nielsen, John, 2013, In : Journal of Biomedicine and Biotechnology. 2013, 13 p., 926942.

    Research output: Contribution to journalJournal articleResearchpeer-review

  19. Published

    Inhibition of ochratoxigenic moulds by Debaryomyces hansenii strains for biopreservation of dry-cured meat products

    Andrade, M. J., Thorsen, L., Rodríguez, A., Córdoba, J. J. & Jespersen, Lene, 2014, In : International Journal of Food Microbiology. 170, p. 70-77 8 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  20. Published

    Fate of CMY-2-Encoding Plasmids Introduced into the Human Fecal Microbiota by Exogenous Escherichia coli

    Anjum, M., Madsen, Jonas Stenløkke, Nesme, Joseph, Jana, B., Wiese, M., Jasinskyte, D., Nielsen, Dennis Sandris, Sørensen, Søren Johannes, Dalsgaard, Anders, Moodley, Arshnee, Bortolaia, V. & Guardabassi, Luca, 2019, In : Antimicrobial Agents and Chemotherapy. 63, 5, 13 p., e02528-18.

    Research output: Contribution to journalJournal articleResearchpeer-review

  21. Published

    A culture-independent method for studying transfer of IncI1 plasmids from wild-type Escherichia coli in complex microbial communities

    Anjum, M., Madsen, Jonas Stenløkke, Espinosa-Gongora, Carmen, Jana, B., Wiese, M., Nielsen, Dennis Sandris, Sørensen, Søren Johannes, Moodley, Arshnee, Bortolaia, V. & Guardabassi, Luca, 2018, In : Journal of Microbiological Methods. 152, p. 18-26 9 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  22. Published

    Role of volatiles in antifungal activity of a Lactobacillus paracasei against Penicillium strains

    Aunsbjerg, S. D., Honoré, A. H., Ebrahimi, P., Vogensen, Finn Kvist, Skov, T. & Knøchel, Susanne, 2015. 1 p.

    Research output: Contribution to conferenceConference abstract for conferenceResearch

  23. Published

    Development of a chemically defined medium for studying foodborne bacterial-fungal interactions

    Aunsbjerg, S. D., Honoré, A. H., Vogensen, Finn Kvist & Knøchel, Susanne, 2015, In : International Dairy Journal. 45, p. 48-55 8 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  24. Published

    Real-time monitoring of fungal inhibition and morphological changes

    Aunsbjerg, S. D., Andersen, K. R. & Knøchel, Susanne, 2015, In : Journal of Microbiological Methods. 119, p. 196-202 7 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  25. Published

    Contribution of volatiles to the antifungal effect of Lactobacillus paracasei in defined medium and yogurt

    Aunsbjerg, S. D., Honoré, A. H., Marcussen, J., Ebrahimi, P., Vogensen, Finn Kvist, Benfeldt, C., Skov, T. & Knøchel, Susanne, 2015, In : International Journal of Food Microbiology. 194, p. 46-53 8 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  26. Published

    Critical review on biofilm methods

    Azeredo, J., Azevedo, N. F., Briandet, R., Cerca, N., Coenye, T., Costa, A. R., Desvaux, M., Di Bonaventura, G., Hébraud, M., Jaglic, Z., Kačániová, M., Knøchel, Susanne, Lourenço, A., Mergulhão, F., Meyer, R. L., Nychas, G., Simões, M., Tresse, O. & Sternberg, C., 2017, In : Critical Reviews in Microbiology. 43, 3, p. 313-351 39 p.

    Research output: Contribution to journalReviewResearchpeer-review

  27. Published

    Identification of the predominant microbiota during production of lait caillé, a spontaneously fermented milk product made in Burkina Faso

    Bayili, G. R., Johansen, Pernille Greve, Nielsen, Dennis Sandris, Sawadogo-Lingani, H., Ouédraogo, G., Diawara, B. & Jespersen, Lene, 2019, In : World journal of microbiology & biotechnology. 35, 7, 13 p., 100.

    Research output: Contribution to journalJournal articleResearchpeer-review

  28. Published

    Technological properties of indigenous Lactococcus lactis strains isolated from Lait caillé, a spontaneous fermented milk from Burkina Faso

    Bayili, G. R., Johansen, Pernille Greve, Hougaard, Anni Bygvrå, Diawara, B., Ouedraogo, G. A., Jespersen, Lene & Sawadogo-Lingani, H., 2020, In : Journal of Dairy Research. 87, 1, p. 110-116 7 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  29. Published

    Oenococcus oeni, a species born and moulded in wine: a critical review of the stress impacts of wine and the physiological responses

    Bech-Terkilsen, Sebastian, Westman, J. O., Swiegers, J. H. & Siegumfeldt, Henrik, 2020, In : Australian Journal of Grape and Wine Research. 26, 3, p. 188-206

    Research output: Contribution to journalReviewResearchpeer-review

  30. Published
  31. Published

    Effect of early-life gut mucosal compromise on disease progression in NOD mice

    Bendtsen, K. M., Hansen, Camilla Hartmann Friis, Krych, Lukasz, Buschard, Karsten Stig, Farlov, H. & Hansen, Axel Kornerup, 2017, In : Comparative Medicine. 67, 5, p. 388-399 12 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  32. Published

    The influence of the young microbiome on inflammatory diseases - lessons from animal studies

    Bendtsen, K. M. B., Fisker, Line, Hansen, Axel Kornerup, Hansen, Camilla Hartmann Friis & Nielsen, Dennis Sandris, 2015, In : Birth Defects Research. Part C: Embryo Today Reviews (Print). 105, 4, p. 278-295 18 p.

    Research output: Contribution to journalReviewResearchpeer-review

  33. Published

    Immunological effects of reduced mucosal integrity in the early life of BALB/c mice

    Bendtsen, K. M. B., Hansen, Camilla Hartmann Friis, Krych, Lukasz, Skovgaard, K., Kot, W. P., Vogensen, Finn Kvist & Hansen, Axel Kornerup, 2017, In : PLOS ONE. 12, 5, 20 p., 0176662.

    Research output: Contribution to journalJournal articleResearchpeer-review

  34. Published

    Traditional Fermented Dairy Products of Ethiopia: A Review

    Berhe, T., Vogensen, Finn Kvist, Ipsen, Richard, Seifu, E., Kurtu, M. Y. & Hansen, E. B., 2017, In : East African Journal of Sciences. 11, 2, p. 73-80 8 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  35. Published

    The impact of different ale brewer’s yeast strains on the proteome of immature beer

    Berner, T. S., Jacobsen, S. & Arneborg, Nils, 2013, In : B M C Microbiology. 13, 8 p., 215.

    Research output: Contribution to journalJournal articleResearchpeer-review

  36. Published

    In vitro modulation of human gut microbiota composition and metabolites by Bifidobacterium longum BB-46 and a citric pectin

    Bianchi, F., Larsen, N., Tieghi, T. D. M., Adorno, M. A. T., Saad, S. M. I., Jespersen, Lene & Sivieri, K., 2019, In : Food Research International. 120, p. 595-602

    Research output: Contribution to journalJournal articleResearchpeer-review

  37. Published

    Modulation of gut microbiota from healthy-weight and obese individuals by pectin, by-products of tropical fruits and probiotic strains

    Bianchi, F., 2019, Department of Food Science, Faculty of Science, University of Copenhagen.

    Research output: Book/ReportPh.D. thesisResearch

  38. Published

    Modulation of gut microbiota from obese individuals by in vitro fermentation of citrus pectin in combination with Bifidobacterium longum BB-46

    Bianchi, F., Larsen, N., de Mello Tieghi, T., Tallarico Adorno, M. A., Kot, W., Saad, S. M. I., Jespersen, Lene & Sivieri, K., 2018, In : Applied Microbiology and Biotechnology. 102, 20, p. 8827-8840 14 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  39. Published

    The gut mycobiome of elderly danes

    Bin Ahmad, H. F., Castro Mejia, Josue Leonardo, Kot, W., Bechshøft, R. L., Reitelseder, S., Holm, L. & Nielsen, Dennis Sandris, 2016. 1 p.

    Research output: Contribution to conferenceConference abstract for conferenceResearch

  40. Published

    The Gut Microbiome of Older Danish Adults – with Particular Focus on the Gut Mycobiome

    Bin Ahmad, H. F., 2019, Department of Food Science, Faculty of Science, University of Copenhagen. 199 p.

    Research output: Book/ReportPh.D. thesisResearch

  41. Published

    Deciphering the association networks of mycobiome communities among the elderly Danes

    Bin Ahmad, H. F., Faust, K., Castro Mejia, Josue Leonardo, Kot, W., Bechshøft, R., Reitelseder, S., Holm, L. & Nielsen, Dennis Sandris, 2017. 1 p.

    Research output: Contribution to conferencePosterResearch

  42. Published

    Influence of commercial baker's yeasts on bread aroma profiles

    Birch, A. N., Petersen, Mikael Agerlin, Arneborg, Nils & Hansen, Åse Solvej, 2013, In : Food Research International. 52, 1, p. 160-166 7 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  43. Published

    Enteral but not parenteral antibiotics enhance gut function and prevent necrotizing enterocolitis in formula-fed newborn preterm pigs

    Birck, M. M., Nguyen, Duc Ninh, Cilieborg, Malene Skovsted, Bin Shamzir Kamal, S., Nielsen, Dennis Sandris, Damborg, Peter Panduro, Olsen, John Elmerdahl, Lauridsen, C., Sangild, Per Torp & Thymann, Thomas, 2016, In : American Journal of Physiology: Gastrointestinal and Liver Physiology. 310, 5, p. G323-G333 11 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  44. Published

    The effect of Lactobacillus paracasei subsp. paracasei L. casei W8® on blood levels of triacylglycerol is independent of colonisation

    Bjerg, A. T., Sørensen, M. B., Krych, Lukasz, Hansen, Lars Hestbjerg, Astrup, Arne, Kristensen, M. B. & Nielsen, Dennis Sandris, 2015, In : Beneficial Microbes. 6, 3, p. 263-269 7 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  45. Published

    Turn Up the Heat-Food and Clinical Escherichia coli Isolates Feature Two Transferrable Loci of Heat Resistance

    Boll, E. J., Marti, R., Hasman, H., Overballe-Petersen, S., Stegger, M., Ng, K., Knøchel, Susanne, Krogfelt, K. A., Hummerjohann, J. & Struve, C., 2017, In : Frontiers in Microbiology. 8, 14 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  46. Published

    Evaluation of the inhibitory effect of alginate oligosaccharide on yeast and mould in yoghurt

    Bouillon, Grégoire Antoine J R, Gåserød, O. & Rattray, Fergal Patrick, 2019, In : International Dairy Journal. 99, 9 p., 104554.

    Research output: Contribution to journalJournal articleResearchpeer-review

  47. Published

    Saccharomyces cerevisiae accumulates GAPDH-derived peptides on its cell surface that induce death of non-Saccharomyces yeasts by cell-to-cell contact

    Branco, P., Kemsawasd, V., Santos, L., Diniz, M., Caldeira, J., Almeida, M. G., Arneborg, Nils & Albergaria, H., 2017, In : F E M S Microbiology Ecology. 93, 5, 10 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  48. Published

    Effect of GAPDH-derived antimicrobial peptides on sensitive yeasts cells: membrane permeability, intracellular pH and H+-influx/-efflux rates

    Branco, P., Albergaria, H., Arneborg, Nils & Prista, C., 2018, In : FEMS Yeast Research. 18, 3, p. 1-8 foy030.

    Research output: Contribution to journalJournal articleResearchpeer-review

  49. Published

    Identification of novel GAPDH-derived antimicrobial peptides secreted by Saccharomyces cerevisiae and involved in wine microbial interactions

    Branco, P., Francisco, D., Chambon, C., Hébraud, M., Arneborg, Nils, Almeida, M. G., Caldeira, J. & Albergaria, H., 2014, In : Applied Microbiology and Biotechnology. 98, 2, p. 843-853 11 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  50. Published

    Antimicrobial properties and death-inducing mechanisms of saccharomycin, a biocide secreted by Saccharomyces cerevisiae

    Branco, P., Francisco, D., Monteiro, M., Almeida, M. G., Caldeira, J., Arneborg, Nils, Prista, C. & Albergaria, H., 2017, In : Applied Microbiology and Biotechnology. 101, 1, p. 159-171 13 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  51. Published

    Antimicrobial peptides (AMPs) produced by Saccharomyces cerevisiae induce alterations in the intracellular pH, membrane permeability and culturability of Hanseniaspora guilliermondii cells

    Branco, P., Monteiro Lomba Viana, T., Albergaria, H. & Arneborg, Nils, 2015, In : International Journal of Food Microbiology. 205, p. 112-118 7 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  52. Published
  53. Published

    The response of foodborne pathogens to osmotic and desiccation stresses in the food chain

    Burgess, C. M., Gianotti, A., Gruzdev, N., Holah, J., Knøchel, Susanne, Lehner, A., Margas, E., Esser, S. S., Sela Saldinger, S. & Tresse, O., 2016, In : International Journal of Food Microbiology. 221, p. 37-53 17 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  54. Published

    Classification of Lactococcus lactis cell envelope proteinase based on gene sequencing, peptides formed after hydrolysis of milk, and computer modeling

    Børsting, M. W., Qvist, K. B., Brockmann, E., Vindeløv, J., Pedersen, T. L., Vogensen, Finn Kvist & Ardö, Ylva Margareta, 2015, In : Journal of Dairy Science. 98, 1, p. 68-77 10 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  55. Published

    Influence of proteolytic Lactococcus lactis subsp. cremoris on ripening of reduced-fat Cheddar cheese made with camel chymosin

    Børsting, M. W., Stallknecht, M. K., Vogensen, Finn Kvist & Ardö, Ylva Margareta, 2015, In : International Dairy Journal. 41, p. 38-45 8 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  56. Published

    The effects of extracellular pH and hydroxycinnamic acids influence the intracellular pH of Brettanomyces bruxellensis DSM 7001

    Campolongo, S., Siegumfeldt, Henrik, Aabo, T. A., Cocolin, L. & Arneborg, Nils, 2014, In : Lebensmittel - Wissenschaft und Technologie. 59, 2, Part 1, p. 1088-1092 5 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  57. Published

    Optimizing protocols for extraction of bacteriophages prior to metagenomic analyses of phage communities in the human gut

    Castro Mejia, Josue Leonardo, Muhammed, Musemma Kedir, Kot, Witold, Neve, H., Franz, C. M. A. P., Hansen, L. H., Vogensen, Finn Kvist & Nielsen, Dennis Sandris, 2015, In : Microbiome. 3, 14 p., 64.

    Research output: Contribution to journalJournal articleResearchpeer-review

  58. Published

    Treatment with a monoclonal anti-IL-12p40 antibody induces substantial gut microbiota changes in an experimental colitis model

    Castro Mejia, Josue Leonardo, Jakesevic, M., Krych, Lukasz, Nielsen, Dennis Sandris, Hansen, L. H., Sondergaard, B. C., Kvist, P. H., Hansen, Axel Kornerup & Holm, T. L., 2016, In : Gastroenterology Research and Practice. 2016, 12 p., 4953120.

    Research output: Contribution to journalJournal articleResearchpeer-review

  59. Published

    Gut microbiota recovery and immune response in ampicillin-treated mice

    Castro Mejia, Josue Leonardo, Jakesevic, M., Fabricius, N. F., Krych, Lukasz, Nielsen, Dennis Sandris, Kot, W., Bendtsen, K. M. B., Vogensen, Finn Kvist, Hansen, Camilla Hartmann Friis & Hansen, Axel Kornerup, 2018, In : Research in Veterinary Science. 118, p. 357-364 8 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  60. Published

    Towards understanding the trajectory and interactions of the gut microbiome in healthy older humans

    Castro Mejia, Josue Leonardo, 2017, Department of Food Science, Faculty of Science, University of Copenhagen.

    Research output: Book/ReportPh.D. thesisResearch

  61. Published
  62. Published

    Restitution of gut microbiota in Ugandan children administered with probiotics (Lactobacillus rhamnosus GG and Bifidobacterium animalis subsp. lactis BB-12) during treatment for severe acute malnutrition

    Castro Mejia, Josue Leonardo, O’Ferrall, S., Krych, Lukasz, O’Mahony, E., Namusoke, H., Lanyero, B., Kot, Witold, Nabukeera-Barungi, N., Michaelsen, Kim F., Mølgaard, Christian, Friis, Henrik, Grenov, Benedikte & Nielsen, Dennis Sandris, 2020, In : Gut Microbes. 11, 4, p. 855-867 13 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  63. Published

    Extraction and purification of viruses from fecal samples for metagenome and morphology analyses

    Castro Mejia, Josue Leonardo, Deng, Ling, Vogensen, Finn Kvist, Reyes, A. & Nielsen, Dennis Sandris, 2018, The Human Virome: Methods and Protocols. Moya, A. & Brocal, V. P. (eds.). Humana Press, p. 49-57 9 p. (Methods in Molecular Biology, Vol. 1838).

    Research output: Chapter in Book/Report/Conference proceedingBook chapterResearchpeer-review

  64. Published

    Impact of botanical fermented foods on metabolic biomarkers and gut microbiota in adults with metabolic syndrome and type 2 diabetes: a systematic review protocol

    Chan, M., Baxter, H., Larsen, N., Jespersen, Lene, Ekinci, E. I. & Howell, K., 2019, In : BMJ Open. 9, 7, 5 p., e029242.

    Research output: Contribution to journalReviewResearchpeer-review

  65. Published

    Whey protein reduces early life weight gain in mice fed a high-fat diet

    Christensen, B. T., Hellgren, L., Lykkesfeldt, Jens, Sejrsen, K., Jeamet, A., Rune, I., Ellekilde, M., Nielsen, Dennis Sandris & Hansen, Axel Kornerup, 2013, In : PLOS ONE. 8, 8, 7 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  66. Published

    Prevotella abundance predicts weight loss success in healthy, overweight adults consuming a whole-grain diet ad libitum: A post hoc analysis of a 6-wk randomized controlled trial

    Christensen, Lars, Vuholm, S., Roager, Henrik Munch, Nielsen, Dennis Sandris, Krych, Lukasz, Kristensen, M. B., Astrup, Arne & Hjorth, Mads Fiil, 2019, In : Journal of Nutrition. 149, 12, p. 2174-2181 8 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  67. Published

    The Smallest Intestine (TSI) - a low volume in vitro model of the small intestine with increased throughput

    Cieplak, T., Wiese, M., Nielsen, Sebastian, Van De Wiele, T., van der Berg, Franciscus Winfried J & Nielsen, Dennis Sandris, 2018, In : FEMS Microbiology Letters. 365, 21, p. 1-8 fny231.

    Research output: Contribution to journalJournal articleResearchpeer-review

  68. Published

    A bacteriophage cocktail targeting Escherichia coli reduces E. coli in simulated gut conditions, while preserving a non-targeted representative commensal normal microbiota

    Cieplak, T., Soffer, N., Sulakvelidze, A. & Nielsen, Dennis Sandris, 2018, In : Gut Microbes. 9, 5, p. 391-399 9 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  69. Published

    Development and application of a low volume, increased throughput in vitro model simulating the passage through small intestine

    Cieplak, T. M., 2017, Department of Food Science, Faculty of Science, University of Copenhagen. 176 p.

    Research output: Book/ReportPh.D. thesisResearch

  70. Published

    Minimal short-term effect of dietary 2'-fucosyllactose on bacterial colonisation, intestinal function and necrotising enterocolitis in preterm pigs

    Cilieborg, Malene Skovsted, Bering, Stine Brandt, Østergaard, M. V., Jensen, M. L., Krych, Lukasz, Newburg, D. S. & Sangild, Per Torp, 2016, In : British Journal of Nutrition. 116, 5, p. 834-841 8 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  71. Published

    High-Quality Draft Genome Sequence of Lactobacillus casei Strain Z11, Isolated from a Human Adult Intestinal Biopsy Sample

    Coba, M. S. M., Marshall, I. P. G., Schreiber, L. & Nielsen, Dennis Sandris, 2017, In : Genome Announcements. 5, 28, 2 p., e00634-17.

    Research output: Contribution to journalJournal articleResearchpeer-review

  72. Published

    Bacillus amyloliquefaciens ssp. plantarum strains as potential protective starter cultures for the production of Bikalga, an alkaline fermented food

    Compaoré, C. S., Nielsen, Dennis Sandris, Sawadogo-Lingani, H., Berner, T. S., Nielsen, K. F., Adimpong, D. B., Diawara, B., Ouédraogo, G. A., Jakobsen, Mogens & Thorsen, L., 2013, In : Journal of Applied Microbiology. 115, 1, p. 133-146 14 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  73. Published

    Co-production of surfactin and a novel bacteriocin by Bacillus subtilis subsp. subtilis H4 isolated from Bikalga, an African alkaline Hibiscus sabdariffa seedfermented condiment

    Compaoré, C. S., Nielsen, Dennis Sandris, Ouoba, L. I. I., Berner, T. S., Nielsen, K. F., Sawadogo-Lingani, H., Diawara, B., Ouédraogo, G. A., Jakobsen, Mogens & Thorsen, L., 2013, In : International Journal of Food Microbiology. 162, 3, p. 297-307 11 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  74. Published

    Influencing cocoa flavour using Pichia kluyveri and Kluyveromyces marxianus in a defined mixed starter culture for cocoa fermentation

    Crafack, M., Mikkelsen, M. B., Saerens, S., Knudsen, M., Blennow, Andreas, Lowor, S., Takrama, J., Swiegers, J. H., Petersen, G. B., Heimdal, H. & Nielsen, Dennis Sandris, 2013, In : International Journal of Food Microbiology. 167, 1, p. 103-116 14 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  75. Published

    Impact of starter cultures and fermentation techniques on the volatile aroma profile of chocolate

    Crafack, M., Petersen, Mikael Agerlin, Eskildsen, C. E. A., Petersen, G. B., Heimdal, H. & Nielsen, Dennis Sandris, 2013. 1 p.

    Research output: Contribution to conferenceConference abstract for conferenceResearch

  76. Published

    Impact of starter cultures and fermentation techniques on the volatile aroma and sensory profile of chocolate

    Crafack, M., Keul, H., Eskildsen, C. E. A., Petersen, Mikael Agerlin, Saerens, S., Blennow, Andreas, Skovmand-Larsen, M., Swiegers, J. H., Petersen, G. B., Heimdal, H. & Nielsen, Dennis Sandris, 2014, In : Food Research International. 63, Part C, p. 306–316 11 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  77. Published

    Modelling the influence of metabolite diffusion on non-starter lactic acid bacteria growth in ripening Cheddar cheese

    Czárán, T., Rattray, Fergal Patrick, Møller, Cleide Oliveira de Almeida & Christensen, B. B., 2018, In : International Dairy Journal. 80, p. 35-45 11 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  78. Published

    Modeling the load of metabolite diffusivity on growth rate of non-starter lactic acid bacteria during cheese ripening

    Czárán, T., Rattray, Fergal Patrick, Møller, Cleide Oliveira de Almeida & Christensen, B., 2017, p. 36. 1 p.

    Research output: Contribution to conferenceConference abstract for conferenceResearch

  79. Published

    Postnatal hematopoiesis and gut microbiota in NOD mice deviate from C57BL/6 mice

    Damlund, D. S. M., Metzdorff, S. B., Hasselby, Jane Preuss, Wiese, M., Lundsager, M. T., Nielsen, Dennis Sandris, Buschard, Karsten Stig, Hansen, Axel Kornerup & Frøkiær, Hanne, 2016, In : Journal of Diabetes Research. 2016, 15 p., 6321980.

    Research output: Contribution to journalJournal articleResearchpeer-review

  80. Published

    Gastrointestinal toxicity during induction treatment for childhood acute lymphoblastic leukemia: the impact of the gut microbiota

    De Pietri, S., Ingham, A. C., Frandsen, T. L., Rathe, M., Krych, Lukasz, Castro Mejia, Josue Leonardo, Nielsen, Dennis Sandris, Nersting, J., Wehner, P. S., Schmiegelow, Kjeld, Hasle, H., Pamp, S. J. & Muller, Klaus, 2020, In : International Journal of Cancer. 147, 7, p. 1953-1962 10 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  81. Published

    A Protocol for Extraction of Infective Viromes Suitable for Metagenomics Sequencing from Low Volume Fecal Samples

    Deng, Ling, Silins, R., Castro Mejia, Josue Leonardo, Kot, W., Jessen, L., Thorsen, J., Shah, S., Stokholm, J., Bisgaard, Hans, Moineau, S. & Nielsen, Dennis Sandris, 2019, In : Viruses. 11, 7, 10 p., 667.

    Research output: Contribution to journalJournal articleResearchpeer-review

  82. Published

    Red-Brown Pigmentation of Acidipropionibacterium jensenii is Tied to Haemolytic Activity and cyl-Like Gene Cluster

    Deptula, Paulina, Loivamaa, I., Smolander, O. P., Laine, P., Roberts, R. J., Piironen, V., Paulin, L., Savijoki, K., Auvinen, P. & Varmanen, P., 2019, In : Microorganisms. 7, 11, 15 p., 512.

    Research output: Contribution to journalJournal articleResearchpeer-review

  83. Published

    Different microbiomes associated with the copepods Acartia tonsa and Temora longicornis from the same marine environment

    Dorosz, J. N. A., Castro Mejia, Josue Leonardo, Hansen, L. H., Nielsen, Dennis Sandris & Skovgaard, A., 2016, In : Aquatic Microbial Ecology. 78, 1, p. 1-9 10 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  84. Published

    Predicting outgrowth and inactivation of Clostridium perfringens in meat products during low temperature long time heat treatment

    Duan, Z., Hansen, T. H., Hansen, T. B., Dalgaard, P. & Knøchel, Susanne, 2016, In : International Journal of Food Microbiology. 230, p. 45-57 13 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  85. Published

    Quantitative determination of mold growth and inhibition by multispectral imaging

    Ebrahimi, P., van der Berg, Franciscus Winfried J, Aunsbjerg, S. D., Honoré, A. H., Benfeldt, C., Jensen, H. M. & Engelsen, Søren Balling, 2015, In : Food Control. 55, p. 82-89 8 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  86. Published

    Real-time metabolomic analysis of lactic acid bacteria as monitored by in vitro NMR and chemometrics

    Ebrahimi, P., Larsen, F. H., Jensen, H. M., Vogensen, Finn Kvist & Engelsen, Søren Balling, 2016, In : Metabolomics. 12, 4, 17 p., 77.

    Research output: Contribution to journalJournal articleResearchpeer-review

  87. Published

    Transfer of gut microbiota from lean and obese mice to antibiotic-treated mice

    Ellekilde, M., Selfjord, E. M., Larsen, C. S., Jakesevic, M., Rune, I., Christensen, B. T., Vogensen, Finn Kvist, Nielsen, Dennis Sandris, Bahl, M. I., Licht, T. R., Hansen, Axel Kornerup & Hansen, Camilla Hartmann Friis, 2014, In : Scientific Reports. 4, 8 p., 5922.

    Research output: Contribution to journalJournal articleResearchpeer-review

  88. Published

    Characterization of the gut microbiota in leptin deficient obese mice: correlation to inflammatory and diabetic parameters

    Ellekilde, M., Krych, Lukasz, Hansen, Camilla Hartmann Friis, Hufeldt, M. R., Dahl, K., Hansen, Lars Hestbjerg, Sørensen, Søren Johannes, Vogensen, Finn Kvist, Nielsen, Dennis Sandris & Hansen, Axel Kornerup, 2014, In : Research in Veterinary Science. 96, 2, p. 241-250 10 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  89. Published

    Sensitivity to oxazolone induced dermatitis is transferable with gut microbiota in mice

    Fisker, Line, Krych, Lukasz, Engkilde, K., Nielsen, Dennis Sandris, Kot, W. P., Hansen, Camilla Hartmann Friis & Hansen, Axel Kornerup, 2017, In : Scientific Reports. 7, 11 p., 44385.

    Research output: Contribution to journalJournal articleResearchpeer-review

  90. Published

    Genomic Characterization of Dairy Associated Leuconostoc Species and Diversity of Leuconostocs in Undefined Mixed Mesophilic Starter Cultures

    Frantzen, C. A., Kot, W., Pedersen, T. B., Ardö, Ylva Margareta, Broadbent, J. R., Neve, H., Hansen, L. H., Dal Bello, F., Ostlie, H. M., Kleppen, H. P., Vogensen, Finn Kvist & Holo, H., 2017, In : Frontiers in Microbiology. 8, 14 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  91. Published

    Influenza A Virus Infection Alters Gut Microbiota Composition in Juvenile Mice

    Fuglsang, E., Krych, Lukasz, Nielsen, Dennis Sandris, Frøkiær, Hanne & Reading, P. C., 2018, In : Journal of Infectious Diseases & Travel Medicine. 2, 3, 10 p., 000118.

    Research output: Contribution to journalJournal articleResearchpeer-review

  92. Published

    Postnatal Administration of Lactobacillus rhamnosus HN001 Ameliorates Perinatal Broad-Spectrum Antibiotic-Induced Reduction in Myelopoiesis and T Cell Activation in Mouse Pups

    Fuglsang, E., Krych, Lukasz, Lundsager, M. T., Nielsen, Dennis Sandris & Frøkiær, Hanne, 2018, In : Molecular Nutrition and Food Research. 62, 22, p. 1-12 1800510.

    Research output: Contribution to journalJournal articleResearchpeer-review

  93. Published

    Changes in Gut Microbiota Prior to Influenza A Virus Infection Do Not Affect Immune Responses in Pups or Juvenile Mice

    Fuglsang, E., Pizzolla, A., Krych, Lukasz, Nielsen, Dennis Sandris, Brooks, A. G., Frøkiær, Hanne & Reading, P. C., 2018, In : Frontiers in Cellular and Infection Microbiology. 8, 16 p., 319.

    Research output: Contribution to journalJournal articleResearchpeer-review

  94. Published

    Kombucha beverage from green, black and rooibos teas: a comparative study looking at microbiology, chemistry and antioxidant activity

    Gaggìa, F., Baffoni, L., Galiano, M., Nielsen, Dennis Sandris, Jakobsen, Rasmus Riemer, Castro Mejia, Josue Leonardo, Bosi, S., Truzzi, F., Musumeci, F., Dinelli, G. & Di Gioia, D., 2019, In : Nutrients. 11, 1, p. 1-22 1.

    Research output: Contribution to journalJournal articleResearchpeer-review

  95. Published

    Health and quality of life in an aging population – food and beyond

    Giacalone, D., Wendin, Karin Maria Elisabet, Kremer, S., Frøst, Michael Bom, Bredie, Wender, Olsson, V., Otto, M. H., Skjoldborg, S. D., Lindberg, U. & Risvik, E., 2016, In : Food Quality and Preference. 47, Part B, p. 166-170 5 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  96. Published

    Questionari Check-All-That-Apply (CATA): aspetti metodologici ed esempi applicativi nell'ambito della sensory e consumer science

    Giacalone, D., 2015, Atti del V convegno nazionale della Società Italiana di Scienze Sensoriali . Fondazione Edmund Mach, p. 69-78 10 p.

    Research output: Chapter in Book/Report/Conference proceedingArticle in proceedingsResearch

  97. Published

    Questionari Check-All-That-Apply (CATA): aspetti metodologici ed esempi applicativi nell’ambito della sensory & consumer science

    Giacalone, D., 2014, p. 69-78. 10 p.

    Research output: Contribution to conferenceConference abstract for conferenceResearch

  98. Published

    Some technological properties of selected strains of Bacillus spp. associated with kantong production in Ghana

    Glover, R. L. K., Madilo, F. K., Terlabie, J. L., Ametefe, E. N. & Jespersen, Lene, 2018, In : International Food Research Journal. 25, 2, p. 602-611 10 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  99. Published

    Optical micro-manipulation of mixed yeast cell populations for analyzing growth behaviour

    Glückstad, J., Rodrigo, P. J., Daria, V. R., Siegumfeldt, Henrik, Nissen, P. & Arneborg, Nils, 21 Jul 2005, In : Progress in Biomedical Optics and Imaging - Proceedings of SPIE. 5699, p. 306-312 7 p., 46.

    Research output: Contribution to journalConference articleResearchpeer-review

  100. Published

    Probiotics to adolescents with obesity: Effects on inflammation and metabolic syndrome

    Gobel, R. J., Larsen, N., Jakobsen, M., Mølgaard, Christian & Michaelsen, Kim F., 1 Jan 2014, Nutrition and Growth: Yearbook 2014. Karger, p. 19-20 2 p. (World Review of Nutrition and Dietetics, Vol. 109).

    Research output: Chapter in Book/Report/Conference proceedingBook chapterResearchpeer-review

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